REL PDBe PDBe PDBe 2013-10-14 2013-10-23 2013-11-06 2016-02-17 Near-atomic resolution cryo-EM structure of Dengue serotype 4 virus Kostyuchenko VA Chew PL Ng TS Lok SM flavivirus, virus, dengue virus serotype 4, cryo-EM, dengue virus Kostyuchenko VA Chew PL Ng TS Lok SM Near-atomic resolution cryo-electron microscopic structure of dengue serotype 4 virus. J.VIROL. 88 477 482 2014 24155405 doi:10.1128/JVI.02641-13 4cbf FULLOVERLAP Mature Dengue virus serotype 4 Mature Dengue virus serotype 4 1 Dengue virus 4 Dengue virus 4 Homo sapiens VERTEBRATES Drosophila melanogaster c6/36 glycoprotein shell 480 1 VIRION SEROTYPE true false 4 singleParticle particle 8.0
12 mM Tris, 120 mM NaCl, 1 mM EDTA
thin carbon film
 ETHANE 100 FEI VITROBOT MARK IV Blot for 2 seconds before plunging FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.0005 0.0035 125000.0 129629.0 FEI TITAN KRIOS AUTOGRID HOLDER 100 Objective lens astigmatism was corrected at 250,000 times magnification 2012-04-14 FEI FALCON I (4k x 4k) 14 716 18 16.
particles selected in EMAN2 boxer swarm mode, CTF estimated with ctffind3
each particle
 I OTHER 4.1 FSC 0.5 CUT-OFF MPSA, EMAN, EMAN2 16602 emd_2485.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 640 640 640 -320 -320 -320 640 640 640 512.0 512.0 512.0 90.0 90.0 90.0 X Y Z -10.29256344 9.6550312 -0.11775072 1.00091231 0.8 0.8 0.8 2.5 AUTHOR Mature dengue virus serotype 4 icosahedral reconstruction
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 3j27 A B C D E F FLEXIBLE FIT CHIMERA, Coot, CNS
Initially fitted in Chimera, model rebuilt in Coot, refined in CNS
real space correlation REAL
emd_2485.png