<?xml version="1.0" encoding="UTF-8"?>
<emd emdb_id="EMD-24743" version="3.0.2.8">
    <admin>
        <current_status>
            <date>2023-01-11</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2021-08-25</deposition>
            <header_release>2022-08-31</header_release>
            <map_release>2022-08-31</map_release>
            <update>2023-01-11</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>Not funded</funding_body>
            </grant_reference>
        </grant_support>
        <title>PSMD2</title>
        <authors_list>
            <author>Johnson MC</author>
            <author>Bashore C</author>
            <author>Ciferri C</author>
            <author>Dueber EC</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Bashore C</author>
                    <author ORCID="0000-0002-0608-3420" order="2">Prakash S</author>
                    <author order="3">Johnson MC</author>
                    <author order="4">Conrad RJ</author>
                    <author order="5">Kekessie IA</author>
                    <author ORCID="0000-0003-2544-0283" order="6">Scales SJ</author>
                    <author order="7">Ishisoko N</author>
                    <author order="8">Kleinheinz T</author>
                    <author order="9">Liu PS</author>
                    <author order="10">Popovych N</author>
                    <author order="11">Wecksler AT</author>
                    <author order="12">Zhou L</author>
                    <author order="13">Tam C</author>
                    <author order="14">Zilberleyb I</author>
                    <author order="15">Srinivasan R</author>
                    <author order="16">Blake RA</author>
                    <author order="17">Song A</author>
                    <author order="18">Staben ST</author>
                    <author order="19">Zhang Y</author>
                    <author order="20">Arnott D</author>
                    <author order="21">Fairbrother WJ</author>
                    <author order="22">Foster SA</author>
                    <author ORCID="0000-0002-7979-9374" order="23">Wertz IE</author>
                    <author ORCID="0000-0002-0804-2411" order="24">Ciferri C</author>
                    <author ORCID="0000-0001-6165-1083" order="25">Dueber EC</author>
                    <title>Targeted degradation via direct 26S proteasome recruitment.</title>
                    <journal_abbreviation>Nat.Chem.Biol.</journal_abbreviation>
                    <country>US</country>
                    <volume>19</volume>
                    <first_page>55</first_page>
                    <last_page>63</last_page>
                    <year>2023</year>
                    <external_references type="PUBMED">36577875</external_references>
                    <external_references type="DOI">doi:10.1038/s41589-022-01218-w</external_references>
                    <external_references type="ISSN">1552-4469</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-24742</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-24743</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>PSMD2</name>
        <supramolecule_list>
            <organelle_or_cellular_component_supramolecule supramolecule_id="1">
                <name>PSMD2</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
            </organelle_or_cellular_component_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.5</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>OTHER</illumination_mode>
                    <imaging_mode>OTHER</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K3 BIOQUANTUM (6k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">64.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <startup_model type_of_model="OTHER">
                    <details>cistem ab initio</details>
                </startup_model>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">3.1</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>232101</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="442369">
        <file>emd_24743.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>480</col>
            <row>480</row>
            <sec>480</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>480</x>
            <y>480</y>
            <z>480</z>
        </spacing>
        <cell>
            <a units="Å">402.24</a>
            <b units="Å">402.24</b>
            <c units="Å">402.24</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.69548815</minimum>
            <maximum>1.025293</maximum>
            <average>-0.0017088185</average>
            <std>0.039193906</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">0.838</x>
            <y units="Å">0.838</y>
            <z units="Å">0.838</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.2</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-24743::::</label>
        <annotation_details>PSMD2</annotation_details>
    </map>
</emd>
