2024-06-05 REL RCSB RCSB RCSB 2021-08-19 2022-03-30 2022-03-30 2024-06-05 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01 GM127548-01A1 United States AP2 bound to the APA domain of SGIP in the presence of heparin Baker RW Hollopeter G AP2, clathrin vesicle, endocytosis, lipid-binding, adaptor, membrane, transport, muniscin, regulator, SGIP1 Partlow EA Cannon KS Hollopeter G Baker RW Structural basis of an endocytic checkpoint that primes the AP2 clathrin adaptor for cargo internalization. Nat.Struct.Mol.Biol. US 29 339 347 2022 35347313 doi:10.1038/s41594-022-00749-z 1545-9985 EMD-24710 other EM volume EMD-24711 other EM volume EMD-24712 other EM volume 7rwb FULLOVERLAP AP2 bound to the APA domain of SGIP in the presence of heparin AP2 bound to the APA domain of SGIP in the presence of heparin 0 1 2 3 4 Mus musculus AP-2 complex subunit alpha-2 Mus musculus 0.07057332000000001
Purified as a GST fusion and tag removed with PreScission Protease
2 Escherichia coli BL21(DE3) LEVO MPAVSKGDGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAV NLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDT MDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSA STDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHH DSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAA KTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQ DVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPERESSILAKLKKKKGGSGLEVLFQ P17427 AP-2 complex subunit beta Mus musculus 0.06695319500000001 2 Escherichia coli BL21(DE3) LEVO MTDSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSI CERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQE IKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ TKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQV QLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLL DELICHIGSLASVYHKPPNAFVEGSHGIHRK Q9DBG3 AP-2 complex subunit mu Mus musculus 0.049726641 2 Escherichia coli BL21(DE3) LEVO MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFE FLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIG WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKI EVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLK VRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC P84091 AP-2 complex subunit sigma Mus musculus 0.017038687999999996 2 Escherichia coli BL21(DE3) LEVO MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY LEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE P62743 singleParticle particle 2 7.4 20.0 C8H18N2O4S HEPES 150.0 NaCl Sodium Chloride 0.05 C14H28O6 n-octyl-beta-d-glucoside Quantifoil R1.2/1.3 COPPER 300 PLASMA CLEANING OTHER ETHANE-PROPANE 100 277 FEI VITROBOT MARK IV
Blot force -10, 4 second blot, 4 uL sample.
Heparin and SGIP APA peptide added at a 2-fold excess 20 mM HEPES pH 7.4, 150 mM NaCl, 1 mM DTT, 0.05% beta-OG
 FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 70.0 2.7 0.5 2.5 36000.0 NITROGEN GATAN K3 (6k x 4k) 55.0 1
Counting Mode
ab initio model generation performed in cryoSPARC v3.2.0
 3.9 FSC 0.143 CUT-OFF cryoSPARC 3.2.0 378591 NOT APPLICABLE NOT APPLICABLE emd_24713.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 444.0 444.0 444.0 90.0 90.0 90.0 X Y Z -3.6099987 6.3511553 0.0008044908 0.07443353 1.11 1.11 1.11 0.448 EMDB 2XA7 PDB experimental model 1BXX PDB experimental model RIGID BODY FIT
phenix.real_space_refine
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