2025-05-21 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name REFINEMENT_DESCRIPTION chem_comp_atom chem_comp_bond em_3d_fitting_list pdbx_initial_refinement_model _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details _em_admin.last_update _em_software.name RCSB RCSB 2021-08-13 2021-11-03 2021-11-03 2025-05-21 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI094386/DE028583/DE025567 United States Cryo-EM structure of bluetongue virus capsid protein VP5 at low endosomal pH Xia X Wu WN Bluetongue virus, capsid, membrane penetration, VP5, VIRAL PROTEIN Xia X Wu W Cui Y Roy P Zhou ZH Bluetongue virus capsid protein VP5 perforates membranes at low endosomal pH during viral entry. Nat Microbiol UK 6 1424 1432 2021 34702979 doi:10.1038/s41564-021-00988-8 2058-5276 EMD-24685 other EM volume
IMS2
 EMD-24686 other EM volume
IMS1
 EMD-24687 other EM volume
IMS3
 7rtn FULLOVERLAP Bluetongue virus (serotype 1 / isolate South Africa) Bluetongue virus (serotype 1 / isolate South Africa) 0 1
The virus was generated from BHK-21 cell and purified by sucrose gradient.
Bluetongue virus (serotype 1 / isolate South Africa) BTV-1 sheep 880.0 VIRION SPECIES false true Outer capsid protein VP5 Bluetongue virus (serotype 1 / isolate South Africa) 0.059070370999999997 3 LEVO MGKVIRSLNRFGKKVGNALTSNTAKKIYSTIGKAAERFAESEIGSAAIDGLVQGSVHSIITGESYGESVKQAVLLNVLGS GEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNK ILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGA GMATAVATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNALAVSVLSKNRAIQENHKELMHI KNEILPRFKKAMDEEKEICGIEDKVIHPKVMMKFKIPRAQQPQIHVYSAPWDSDDVFFFHCISHHHANESFFLGFDLSID LVHYEDLTAHWHALGAAQTAAGRTLTEAYREFLNLAISNAFGTQMHTRRLVRSKTVHPIYLGSLHYDISFSDLRGNAQRI VYDDELQMHILRGPIHFQRRAILGALKFGCKVLGDRLDVPLFLRNA K7QP12 singleParticle particle 5.5 20.0 sodium citrate PELCO Ultrathin Carbon with Lacey Carbon COPPER 400 CARBON CONTINUOUS GLOW DISCHARGE AIR ETHANE 100 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Quantum LS 20 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 1 3609 8.0 50.0 1 913440 PHASE FLIPPING ONLY 1 C1 3.4 FSC 0.143 CUT-OFF RELION 3.1 572331 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD 5 RELION 3.1 emd_24684.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 408.0 408.0 408.0 90.0 90.0 90.0 X Y Z -0.065002136 0.1199101 0.002361623 0.008015179 1.36 1.36 1.36 0.018 AUTHOR Cryo-EM structure of Bluetongue virus at low endosomal pH 3J9E PDB experimental model OTHER