Peptide-19 bound to the Glucagon-Like Peptide-1 Receptor (GLP-1R)

2026-03-04 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond em_3d_fitting_list em_admin pdbx_entry_details pdbx_initial_refinement_model pdbx_modification_feature _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_admin.last_update _pdbx_entry_details.has_protein_modification REFINEMENT_DESCRIPTION em_3d_fitting_list em_admin pdbx_initial_refinement_model _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_admin.last_update RCSB RCSB 2021-08-12 2021-10-06 2021-10-06 2026-03-04 National Health and Medical Research Council (NHMRC, Australia) 1150083 Japan National Health and Medical Research Council (NHMRC, Australia) 1126857 Japan National Health and Medical Research Council (NHMRC, Australia) 1184726 Japan National Health and Medical Research Council (NHMRC, Australia) 1154434 Japan National Health and Medical Research Council (NHMRC, Australia) 1155302 Japan Australian Research Council (ARC) IC200100052 Japan Japan Science and Technology 18069571 Japan Peptide-19 bound to the Glucagon-Like Peptide-1 Receptor (GLP-1R) Johnson RM Danev R Glucagon-Like peptide-1 Receptor (GLP-1R), Peptide-19 cryo-EM, MEMBRANE PROTEIN Johnson RM Zhang X Piper SJ Nettleton TJ Vandekolk TH Langmead CJ Danev R Sexton PM Wootten D Cryo-EM structure of the dual incretin receptor agonist, peptide-19, in complex with the glucagon-like peptide-1 receptor. Biochem.Biophys.Res.Commun. US 578 84 90 2021 34547628 doi:10.1016/j.bbrc.2021.09.016 1090-2104 0146 BBRCA9 7rtb FULLOVERLAP EMDB EMD-24680 associated EM volume

Peptide-19-GLP-1R-Gs complex Peptide-19-GLP-1R-Gs complex 0 1 2 3 4 5 6 Homo sapiens Guanine nucleotide-binding protein G(s) subunit alpha isoforms short Homo sapiens 0.045683434 1 Trichoplusia ni LEVO MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKNTIVKQMRILHVNGFNGEGGEEDPQAA RSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVR ACYERSNEYQLIDCAQYFLDKIDVIKQADYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGAQRDERRKWIQCFND VTAIIFVVASSSYNMVIREDNQTNRLQAALKLFDSIWNNKWLRDTSVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTT PEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL P63092 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 Homo sapiens 0.037285733999999994 1 Trichoplusia ni LEVO SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLII WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT DDGMAVATGSWDSFLKIWN P62873 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 Homo sapiens 0.006375332 1 Trichoplusia ni LEVO NTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFR P59768 Nb35 Lama glama 0.013885439 1 Escherichia coli LEVO QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLY LQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS Glucagon-like peptide 1 receptor Homo sapiens 0.056668315999999996 1 Trichoplusia ni LEVO MKTIIALSYIFCLVFADYKDDDDLEVLFQGPRPQGATVSLWETVQKWREYRRQCQRSLTEDPPPATDLFCNRTFDEYACW PDGEPGSFVNVSCPWYLPWASSVPQGHVYRFCTAEGLWLQKDNSSLPWRDLSECEESKRGERSSPEEQLLFLYIIYTVGY ALSFSALVIASAILLGFRHLHCTRNYIHLNLFASFILRALSVFIKDAALKWMYSTAAQQHQWDGLLSYQDSLSCRLVFLL MQYCVAANYYWLLVEGVYLYTLLAFSVFSEQWIFRLYVSIGWGVPLLFVVPWGIVKYLYEDEGCWTRNSNMNYWLIIRLP ILFAIGVNFLIFVRVICIVVSKLKANLMCKTDIKCRLAKSTLTLIPLLGTHEVIFAFVMDEHARGTLRHIKLFTELSFTS FQGLMVAILYCFVNNEVQLEFRKSWERWRLEHLHIQRDSSMKPLKCPTSSLSSGATAGSSMYTATCQASCSPAGLEVLFQ GPHHHHHHHH P43220 Peptide-19 synthetic construct 0.004093503 1 LEVO Y(AIB)EGTFTSDYSIYLDKQAA(AIB)EFVNWLLAGGPSAPPPSK water 1.8015e-05 1 HOH singleParticle particle 7.4 UltrAuFoil R1.2/1.3 GOLD 300 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 130000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 15 GATAN K3 BIOQUANTUM (6k x 4k) 1 6858 4.352 70.15 1 4270000 Gctf PHASE FLIPPING AND AMPLITUDE CORRECTION 2.14 FSC 0.143 CUT-OFF cryoSPARC 624000 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD emd_24680.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.0 208.0 208.0 90.0 90.0 90.0 X Y Z -0.52382296 0.98934036 0.00072006416 0.023018315 0.65 0.65 0.65 0.0474 AUTHOR ::::EMDATABANK.org::::EMD-24680:::: The sharpened cryoSPARC consensus map at 2.14A. 6X18 PDB experimental model emd_24680_msk_1.map emd_24680_additional_10.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.0 208.0 208.0 90.0 90.0 90.0 X Y Z -0.016622823 0.03504096 0.000019141293 0.0009663122 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::EMD-24680:::: The local resolution map for the ECD-focussed refinement generated using RELION emd_24680_additional_9.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.0 208.0 208.0 90.0 90.0 90.0 X Y Z -0.038422354 0.059257094 -0.00036480816 0.001565343 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::EMD-24680:::: The local resolution map for the best-resolved ECD refinement generated using RELION emd_24680_additional_8.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.0 208.0 208.0 90.0 90.0 90.0 X Y Z -0.051260088 0.0953095 -0.00004253606 0.0018312662 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::EMD-24680:::: The local resolution map for the consensus map generated using RELION emd_24680_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.0 208.0 208.0 90.0 90.0 90.0 X Y Z -0.0301485 0.057199795 -0.000014565443 0.0011890368 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::EMD-24680:::: The local resolution map for the receptor-focussed refinement generated using RELION emd_24680_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.0 208.0 208.0 90.0 90.0 90.0 X Y Z -0.0046445285 0.013376943 -0.000042748183 0.0005284127 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::EMD-24680:::: Unsharpened consensus refinement generated in RELION emd_24680_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.0 208.0 208.0 90.0 90.0 90.0 X Y Z -0.005138097 0.010450159 0.000030932653 0.00045245633 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::EMD-24680:::: Unsharpened ECD-only focussed refinement from RELION emd_24680_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.0 208.0 208.0 90.0 90.0 90.0 X Y Z -0.025548527 0.047715615 0.000080863094 0.0009627204 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::EMD-24680:::: Sharpened consensus refinement generated in RELION emd_24680_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.0 208.0 208.0 90.0 90.0 90.0 X Y Z -0.018385636 0.035478156 0.000059585815 0.00064132764 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::EMD-24680:::: Sharpened receptor-only focussed refinement from RELION emd_24680_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.0 208.0 208.0 90.0 90.0 90.0 X Y Z -0.0035296336 0.01171585 -0.00002278558 0.0004545957 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::EMD-24680:::: Unsharpened receptor-only focussed refinement from RELION emd_24680_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.0 208.0 208.0 90.0 90.0 90.0 X Y Z -0.13738689 0.37591872 0.00072006416 0.0132942395 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::EMD-24680:::: The unsharpened cryoSPARC consensus map. emd_24680_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.0 208.0 208.0 90.0 90.0 90.0 X Y Z -0.18187386 0.44777963 0.00090952293 0.01626676 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::EMD-24680:::: Half map A from cryoSPARC consensus refinement. emd_24680_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 208.0 208.0 208.0 90.0 90.0 90.0 X Y Z -0.15356943 0.40834907 0.00090464344 0.01625396 0.65 0.65 0.65 AUTHOR ::::EMDATABANK.org::::EMD-24680:::: Half map B from cryoSPARC consensus refinement.