2022-04-20 REL RCSB RCSB RCSB 2021-08-09 2021-12-29 2021-12-29 2022-04-20 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) DP5-OD021396 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) U54 AI150472 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R35-GM136412 United States E. coli bL17-limitation ribosome assembly intermediate #34 Rabuck-Gibbons JN Lyumkis D Williamson JR Rabuck-Gibbons JN Lyumkis D Williamson JR Quantitative mining of compositional heterogeneity in cryo-EM datasets of ribosome assembly intermediates. Structure UK 30 498 509.e4 2022 34990602 doi:10.1016/j.str.2021.12.005 0969-2126 2005 STRUE6 EMD-24491 other EM volume
ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
 EMD-24627 other EM volume
ribosome assembly intermediate from same dataset
 EMD-24631 other EM volume
ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
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ribosome assembly intermediate from same dataset
 EMD-24660 other EM volume
ribosome assembly intermediate from same dataset
 EMD-24661 associated EM volume bL17-depleted large ribosomal subunit assembly intermediate #34 bL17-depleted large ribosomal subunit assembly intermediate #34 0
bL17-depleted large ribosomal subunit assembly intermediate #34
Escherichia coli NCM3722 1.5 singleParticle particle 7.5 20.0 TrisHCl 100.0 NH4Cl 10.0 MgCl2 0.5 EDTA 6.0 b-mercaptoethanol Quantifoil R1.2/1.3 GOLD GOLD HOLEY ETHANE HOMEMADE PLUNGER
3 ul of this sample was added to 3 plasma cleaned (Gatan, Solarus) 1.2mm hole, 1.3mm spacing holey gold grids (Russo and Passmore, 2014). Grids were manually frozen in liquid ethane..
depleted ribosome assembly intermediate purified by sucrose gradient
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 22500.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN
In order to account for highly preferred orientation of the specimen, data was acquired using a tilt of -20 degrees.
GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 1-50 1 833 10.0 35.0 1 CTFFIND 7.1 FSC 0.143 CUT-OFF FREALIGN X 5068 MAXIMUM LIKELIHOOD RELION 2.1 MAXIMUM LIKELIHOOD FREALIGN X
FrealignX
 FREALIGN X emd_24661.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 419.19998 419.19998 419.19998 90.0 90.0 90.0 X Y Z -10.542128 22.997192 -0.4649591 1.2393528 1.31 1.31 1.31 5.8 AUTHOR E. coli bL17-limitation ribosome assembly intermediate #34 (C-class) sharpened map emd_24661_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 422.40002 422.40002 422.40002 90.0 90.0 90.0 X Y Z -12.019025 22.183565 -0.4649591 1.2608675 1.32 1.32 1.32 AUTHOR E. coli bL17-limitation ribosome assembly intermediate #34 (C-class) unsharpened map emd_24661_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 160 160 160 0 0 0 160 160 160 419.19998 419.19998 419.19998 90.0 90.0 90.0 X Y Z 0.0 1.0 0.018061034 0.1331722 2.62 2.62 2.62 AUTHOR E. coli bL17-limitation ribosome assembly intermediate #34 (C-class) binarized map emd_24661_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 160 160 160 0 0 0 160 160 160 419.19998 419.19998 419.19998 90.0 90.0 90.0 X Y Z -25.22246 44.411007 -0.07436199 3.7372892 2.62 2.62 2.62 AUTHOR E. coli bL17-limitation ribosome assembly intermediate #34 (C-class) binned, unmasked map emd_24661_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 422.40002 422.40002 422.40002 90.0 90.0 90.0 X Y Z -5.2704496 6.6090603 -0.02103072 0.30643472 1.32 1.32 1.32 AUTHOR E. coli bL17-limitation ribosome assembly intermediate #34 (C-class) odd halfmap emd_24661_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 422.40002 422.40002 422.40002 90.0 90.0 90.0 X Y Z -4.943088 6.516262 -0.017038144 0.3115733 1.32 1.32 1.32 AUTHOR E. coli bL17-limitation ribosome assembly intermediate #34 (C-class) even halfmap