2024-06-05 REL RCSB RCSB RCSB 2021-08-09 2022-01-19 2022-01-19 2024-06-05 Other private Other private United States Cryo-EM Structure of Nanodisc reconstituted ABCD1 in nucleotide bound outward open conformation Alam A Le LTM VLCFA ABC transporter ABCD1, TRANSPORT PROTEIN Le LTM Thompson JR Dang PX Bhandari J Alam A Structures of the human peroxisomal fatty acid transporter ABCD1 in a lipid environment Commun Biol UK 5 7 2022 doi:10.1038/s42003-021-02970-w 2399-3642 EMD-24657 other EM volume
Cryo-EM Map of nanodisc reconstituted human ABCD1 in inward open conformation
 7rr9 FULLOVERLAP Human ABCD1 in Porcine BPL/Ch/MSP1D1 nanodiscs Human ABCD1 in Porcine BPL/Ch/MSP1D1 nanodiscs 0 1
Human ABCD1 recombinantly expressed in HEK293 TREX cell line and reconstituted in MSP1D1 nanodiscs comprising 4:1 mixture of Porcine Brain Polar Lipids:Cholesterol. The reported molecular weight of 0.0829 MDa is for the monomer. The assembly is a homodimer. The dimer was confirmed using SEC.
Homo sapiens 0.0829 ATP-binding cassette sub-family D member 1 Homo sapiens 0.08304086699999999 2 Homo sapiens LEVO MPVLSRPRPWRGNTLKRTAVLLALAAYGAHKVYPLVRQCLAPARGLQAPAGEPTQEASGVAAAKAGMNRVFLQRLLWLLR LLFPRVLCRETGLLALHSAALVSRTFLSVYVARLDGRLARCIVRKDPRAFGWQLLQWLLIALPATFVNSAIRYLEGQLAL SFRSRLVAHAYRLYFSQQTYYRVSNMDGRLRNPDQSLTEDVVAFAASVAHLYSNLTKPLLDVAVTSYTLLRAARSRGAGT AWPSAIAGLVVFLTANVLRAFSPKFGELVAEEARRKGELRYMHSRVVANSEEIAFYGGHEVELALLQRSYQDLASQINLI LLERLWYVMLEQFLMKYVWSASGLLMVAVPIITATGYSESDAEAVKKAALEKKEEELVSERTEAFTIARNLLTAAADAIE RIMSSYKEVTELAGYTARVHEMFQVFEDVQRCHFKRPRELEDAQAGSGTIGRSGVRVEGPLKIRGQVVDVEQGIICENIP IVTPSGEVVVASLNIRVEEGMHLLITGPNGCGKSSLFRILGGLWPTYGGVLYKPPPQRMFYIPQRPYMSVGSLRDQVIYP DSVEDMQRKGYSEQDLEAILDVVHLHHILQREGGWEAMCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVE GKIFQAAKDAGIALLSITHRPSLWKYHTHLLQFDGEGGWKFEKLDSAARLSLTEEKQRLEQQLAGIPKMQRRLQELCQIL GEAVAPAHVPAPSPQGPGGLQGAST P33897 7.6.2.4 UNKNOWN LIGAND 0.0007340389999999999 2 UNL CHOLESTEROL 0.000386654 2 CLR MAGNESIUM ION 2.4305e-05 2 MG PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER 0.0005232469999999999 2 AGS singleParticle particle 0.5 7.5
25mM HEPES pH 7.5, 150mM NaCl, 5mM ATP gammaS, 10mM Magnesium Chloride
 Quantifoil R1.2/1.3 COPPER 300 CARBON HOLEY GLOW DISCHARGE ETHANE 90 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.8 2.6 FEI FALCON III (4k x 4k) COUNTING 60.0 60.0 1 EMD-9791 C2 3.5 FSC 0.143 CUT-OFF RELION 3.1 37237 PROJECTION MATCHING RELION 3.1 PROJECTION MATCHING RELION 3.1 1 RELION 3.1 emd_24656.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 322.19998 322.19998 322.19998 90.0 90.0 90.0 X Y Z -0.09108259 0.164943 0.000010715035 0.0049018906 0.8949999 0.8949999 0.8949999 0.025 AUTHOR Nanodisc reconstituted and nucleotide bound human ABCD1 (OO conformation) 6JBJ PDB experimental model AB INITIO MODEL REAL