REL PDBe PDBe PDBe 2013-08-13 2013-09-11 2013-10-02 2013-10-16 Mechanism of Membranous Tunnelling Nanotube Formation in Viral Genome Delivery Peralta B Gil-Carton D Castano-Diez D Bertin A Boulogne C Oksanen HM Bamford DH Abrescia NGA virus, structural virology, viral genome delivery, proteo-lipidic structures, membrane remodelling, nanotube formation, single-particle tomography, cellular tomography Peralta B Gil-Carton D Castano-Diez D Bertin A Boulogne C Oksanen HM Bamford DH Abrescia NGA Mechanism of membranous tunnelling nanotube formation in viral genome delivery. PLOS BIOL. 11 e1001667 e1001667 2013 24086111 doi:10.1371/journal.pbio.1001667 Abrescia NG Cockburn JJ Grimes JM Sutton GC Diprose JM Butcher SJ Fuller SD SanMartin C Burnett RM Stuart DI Bamford DH Bamford JK Insights into assembly from structural analysis of bacteriophage PRD1 NATURE 432 68 74 2004 15525981 doi:10.1038/nature03056 Cockburn JJ Abrescia NG Grimes JM Sutton GC Diprose JM Benevides JM Thomas GJ Bamford JK Bamford DH Stuart DI Membrane structure and interactions with protein and DNA in bacteriophage PRD1. NATURE 432 122 125 2004 15525993 doi:10.1038/nature03053 Protruding tube (average class 2) from the lipid-containing bacteriophage PRD1 Protruding tube (average class 2) from the lipid-containing bacteriophage PRD1 1 Enterobacteria phage PRD1
This is the self-assembling proteo-lipid tube. Infects both Escherichia coli and Salmonella enterica
Enterobacteria phage PRD1 Escherichia coli BACTERIA(EUBACTERIA) 70 P3 VIRION SPECIES false false bacteriophage PRD1 subtomogramAveraging particle 0.6 7.2
20 mM Phosphate Buffer 1 mM MgCl2
200 mesh QUANTIFOIL R 2/1 (or R 3.5/1) copper grid, glow discharged in air atmosphere
 ETHANE 95 120 FEI VITROBOT MARK III Blot for 4 seconds before plunging JEOL 2200FS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 5.0 8.0 25000.0 34138.0 GATAN LIQUID NITROGEN 80 105 99 Objective lens astigmatism was corrected at 120,000 times magnification In-column Omega filter 10.0 30.0 2012-01-04 GATAN ULTRASCAN 4000 (4k x 4k) OTHER 100 16. -64 64
This class 2 is one of the 4 classes used during multi-reference alignment. Please see details in primary reference.
C1 OTHER 66.0 FSC 0.5 CUT-OFF IMOD, Dynamo 33 emd_2439.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 48 48 48 0 0 0 48 48 48 422.40002 422.40002 422.40002 90.0 90.0 90.0 X Y Z -2.89702868 3.44850159 -0.17037711 0.53865904 8.8 8.8 8.8 0.8 AUTHOR This sub-tomogram averaged tube density refers to the average class-2. Before displaying it's better to apply a low-pass filter to 50 Ang and contour at 0.8sigma (where sigma is defined by the threshold level displayed by Chimera over the RMS of the map).
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