<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2423" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2013-07-19</deposition>
         <header_release>2013-07-31</header_release>
         <map_release>2013-08-07</map_release>
         <update>2013-09-18</update>
      </key_dates>
      <title>3-dimensional structure of the toxin-delivery particle antifeeding prophage of Serratia entomophila</title>
      <authors_list>
         <author>Heymann JB</author>
         <author>Bartho JD</author>
         <author>Rybakova D</author>
         <author>Venugopal HP</author>
         <author>Winkler DC</author>
         <author>Sen A</author>
         <author>Hurst MRH</author>
         <author>Mitra AK</author>
      </authors_list>
      <keywords>tube-baseplate complex, tailocin, type VI secretion system, helical sheath, phage tail-like</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Heymann JB</author>
               <author order="2">Bartho JD</author>
               <author order="3">Rybakova D</author>
               <author order="4">Venugopal HP</author>
               <author order="5">Winkler DC</author>
               <author order="6">Sen A</author>
               <author order="7">Hurst MR</author>
               <author order="8">Mitra AK</author>
               <title>Three-dimensional structure of the toxin-delivery particle antifeeding prophage of Serratia entomophila.</title>
               <journal>J.BIOL.CHEM.</journal>
               <volume>288</volume>
               <first_page>25276</first_page>
               <last_page>25284</last_page>
               <year>2013</year>
               <external_references type="PUBMED">23857636</external_references>
               <external_references type="DOI">doi:10.1074/jbc.M113.456145</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Tube-baseplate complex of the antifeeding prophage of Serratia entomophila</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Tube-baseplate complex of the antifeeding prophage of Serratia entomophila</name>
            <details>Tube-baseplate complex produced from 15 ORF products</details>
            <number_unique_components>1</number_unique_components>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="TBC">Antifeeding prophage tube-baseplate complex</name>
            <natural_source database="NCBI">
               <organism ncbi="42906">Serratia entomophila</organism>
            </natural_source>
            <details>Product of the expression of 15 ORF's of the pADAP plasmid of Serratia entomophila</details>
            <number_of_copies>1</number_of_copies>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="316385">Escherichia coli str. K-12 substr. DH10B</recombinant_organism>
               <recombinant_plasmid>pAF1-15</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>7.5</ph>
                  <details>25 mM TBS, 130 mM NaCl</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>2% Uranyl acetate</details>
               </staining>
               <grid>
                  <details>Carbon film</details>
               </grid>
               <vitrification>
                  <cryogen_name>NONE</cryogen_name>
                  <instrument>OTHER</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI 12</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>LAB6</electron_source>
               <acceleration_voltage units="kV">120</acceleration_voltage>
               <nominal_cs units="mm">2.0</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.6</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">2.3</nominal_defocus_max>
               <nominal_magnification>52000.0</nominal_magnification>
               <calibrated_magnification>50364.0</calibrated_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <date>2013-02-11</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>NIKON SUPER COOLSCAN 9000</scanner>
                        <sampling_interval units="&#181;m">12.7</sampling_interval>
                     </digitization_details>
                     <number_real_images>75</number_real_images>
                     <bits_per_pixel>16.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>Each particle, phase flipping, baseline correction</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C6</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">19.0</resolution>
               <resolution_method>FSC 0.33 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>Bsoft</name>
                  </software>
               </software_list>
               <details>Final map filtered by FSC curve</details>
               <number_images_used>1146</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="16845">
      <file>emd_2423.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>140</col>
         <row>140</row>
         <sec>220</sec>
      </dimensions>
      <origin>
         <col>-70</col>
         <row>-70</row>
         <sec>-200</sec>
      </origin>
      <spacing>
         <x>140</x>
         <y>140</y>
         <z>220</z>
      </spacing>
      <cell>
         <a units="&#8491;">429.8</a>
         <b units="&#8491;">429.8</b>
         <c units="&#8491;">675.39996</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-20.79102516</minimum>
         <maximum>11.49039936</maximum>
         <average>0.0</average>
         <std>1.0</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">3.07</x>
         <y units="&#8491;">3.07</y>
         <z units="&#8491;">3.07</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>1.25</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of the Afp tube-baseplate complex</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2423::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_2423.png</file>
         </figure>
      </figure_list>
   </interpretation>
   <validation>
      <fsc_curve>
         <file>emd_2423_fsc.xml</file>
      </fsc_curve>
   </validation>
</emd>