2025-06-04 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name DERIVED_CALCULATIONS atom_site chem_comp_atom chem_comp_bond struct_conn _atom_site.auth_atom_id _atom_site.label_atom_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_label_atom_id STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details pdbx_modification_feature _em_admin.last_update _em_software.name _pdbx_entry_details.has_protein_modification RCSB RCSB 2021-06-04 2021-11-10 2021-11-10 2025-06-04 Other private The structure of bovine thyroglobulin with iodinated tyrosines Kim K Clarke OB thyroid hormone synthesis, HORMONE Kim K Kopylov M Bobe D Kelley K Eng ET Arvan P Clarke OB The structure of natively iodinated bovine thyroglobulin. Acta Crystallogr D Struct Biol 77 1451 1459 2021 34726172 doi:10.1107/S2059798321010056 2059-7983 7n4y FULLOVERLAP Bovine thyroglobulin purified from bovine thyroid Bovine thyroglobulin purified from bovine thyroid 0 1 Bos indicus x Bos taurus 0.66 Thyroglobulin Bos indicus x Bos taurus 0.303087844 2 LEVO NIFE(T44)QVDAQPLRPCELQRERAFLKREDYVPQCAEDGSFQTVQCGKDGASCWCVDADGREVPGSRQPGRPAACLSF CQLQKQQILLSSYINSTATSYLPQCQDSGDYSPVQCDLRRRQCWCVDAEGMEVYGTRQQGRPARCPRSCEIRNRRLLHGV GDRSPPQCSPDGAFRPVQCKFVNTTDMMIFDLVHSYSRFPDAFVTFSSFRSRFPEVSGYCYCADSQGRELAETGLELLLD EIYDTIFAGLDLASTFAETTLYRILQRRFLAVQLVISGRFRCPTKCEVERFAATSFRHPYVPSCHPDGEYQAAQCQQGGP CWCVDSRGQEIPGTRQRGEPPSCAEDQSCPSERRRAFSRLRFGPSGYFSRRSLLLAPEEGPVSQRFARFTASCPPSIKEL FLDSGIFQPMLQGRDTRFVAPESLLKEAIRGLFPSRELARLALQFTTNAKRLQQNLFGGRFLVNVGQFNLSGALGTRGTF NFSHFFQQLGLPGFQDGRALADLAKPLSVGLNSNPASEAPKASKIDVALRKPVVGSFGFEVNLQENQNALQFLSSFLELP EFLLFLQHAISVPEDIARDLGDVMEMVFSSQGCGQAPGSLFVPACTAEGSYEEVQCFAGDCWCVDAQGRELAGSRVRGGR PRCPTECEKQRARMQSLLGSQPAGSSLFVPACTSKGNFLPVQCFNSECYCVDTEGQPIPGTRSALGEPKKCPSPCQLQAE RAFLGTVRTLVSNPSTLPALSSIYIPQCSASGQWSPVQCDGPPEQAFEWYERWEAQNSAGQALTPAELLMKIMSYREAAS RNFRLFIQNLYEAGQQGIFPGLARYSSFQDVPVSVLEGNQTQPGGNVFLEPYLFWQILNGQLDRYPGPYSDFSAPLAHFD LRSCWCVDEAGQKLEGTRNEPNKVPACPGSCEEVKLRVLQFIREAEEIVTYSNSSRFPLGESFLAAKGIRLTDEELAFPP LSPSRETFLEKFLSGSDYAIRLAAQSTFDFYQRRLVTLAESPRAPSPVWSSAYLPQCDAFGGWEPVQCHAATGHCWCVDG KGEYVPTSLTARSRQIPQCPTSCERLRASGLLSSWKQAGVQAEPSPKDLFIPTCLETGEFARLQASEAGTWCVDPASGEG VPPGTNSSAQCPSLCEVLQSGVPSRRTSPGYSPACRAEDGGFSPVQCDPAQGSCWCVLGSGEEVPGTRVAGSQPACESPQ CPLPFSVADVAGGAILCERASGLGAAAGQRCQLRCSQGYRSAFPPEPLLCSVQRRRWESRPPQPRACQRPQFWQTLQTQA QFQLLLPLGKVCSADYSGLLLAFQVFLLDELTARGFCQIQVKTAGTPVSIPVCDDSSVKVECLSRERLGVNITWKLQLVD APPASLPDLQDVEEALAGKYLAGRFADLIQSGTFQLHLDSKTFSADTSIRFLQGDRFGISPRTQFGCLEGFGRVVAASDA SQDALGCVKCPEGSYFQDEQCIPCPAGFYQEQAGSLACVPCPEGRTTVYAGAFSQTHCVTDCQKNEVGLQCDQDGQYRAS QRDRTSGKAFCVDGEGRRLPWTEAEAPLVDAQCLVMRKFEKLPESKVIFSADVAVMVRSEVPGSESSLMQCLADCALDEA CGFLTVSTAGSEVSCDFYAWASDSIACTTSGRSEDALGTSQATSFGSLQCQVKVRSREGDPLAVYLKKGQEFTITGQKRF EQTGFQSALSGMYSPVTFSASGASLAEVHLFCLLACDHDSCCDGFILVQVQGGPLLCGLLSSPDVLLCHVRDWRDPAEAQ ANASCPGVTYDQDSRQVTLRLGGQEIRGLTPLEGTQDTLTSFQQVYLWKDSDMGSRSESMGCRRDTEPRPASPSETDLTT GLFSPVDLIQVIVDGNVSLPSQQHWLFKHLFSLQQANLWCLSRCAGEPSFCQLAEVTDSEPLYFTCTLYPEAQVCDDILE SSPKGCRLILPRRPSALYRKKVVLQDRVKNFYNRLPFQKLTGISIRNKVPMSDKSISSGFFECERLCDMDPCCTGFGFLN VSQLKGGEVTCLTLNSLGLQTCSEE(TYI)GGVWRILDCGSPDTEVRTYPFGWYQKPVSPSDAPSFCPSVALPALTENVA LDSWQSLALSSVIVDPSIRNFDVAHISTAAVGNFSAARDRCLWECSRHQDCLVTTLQTQPGAVRCMFYADTQSCTHSLQA QNCRLLLHEEATYIYRKPNIPLPGFGTSSPSVPIATHGQLLGRSQAIQVGTSWKPVDQFLGVPYAAPPLGEKRFRAPEHL NWTGSWEATKPRARCWQPGIRTPTPPGVSEDCLYLNVFVPQNMPPNASVLVFFHNAAEGKGSGDRPAVDGSFLAAVGNLI VVTASYRTGIFGFLSSGSSELSGNWGLLDQVVALTWVQTHIQAFGGDPRRVTLAADRGGADIASIHLVTTRAANSRLFRR AVLMGGSALSPAAVIRPERARQQAAALAKEVGCPSSSVQEMVSCLRQEPARILNDAQTKLLAVSGPFHYWGPVVDGQYLR ETPARVLQRAPRVKVDLLIGSSQDDGLINRAKAVKQFEESQGRTSSKTAFYQALQNSLGGEAADAGVQAAATWYYSLEHD SDD(T44)ASFSRALEQATRDYFIICPVIDMASHWARTVRGNVFMYHAPESYSHSSLELLTDVLYAFGLPFYPAYEGQFT LEEKSLSLKIMQYFSNFIRSGNPNYPHEFSRRAPEFAAPWPDFVPRDGAESYKELSVLLPNRQGLKKADCSFWSKYIQSL KASADETKDGPSADSEEEDQPAGSGLTEDLLGLPELASKTYSK A0A4W2CHS8 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 10 NAG water 1.8015e-05 308 HOH singleParticle particle 7.4 Quantifoil R0.6/1 GOLD 300 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) COUNTING 71.32 1 RELION PHASE FLIPPING AND AMPLITUDE CORRECTION 2.61 FSC 0.143 CUT-OFF 554053 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD RELION emd_24181.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 381.5936 381.5936 381.5936 90.0 90.0 90.0 X Y Z -0.0070776534 0.32060194 0.0028776657 0.0057799513 0.7453 0.7453 0.7453 0.03 AUTHOR Combined EM map of reconstructions from focused refinements around the region surrounding half of the dimeric Tg molecule and the arm region of a Tg monomer - resampled in finer grid points. emd_24181_msk_2.map emd_24181_msk_1.map emd_24181_additional_10.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 381.5936 381.5936 381.5936 90.0 90.0 90.0 X Y Z 0.0 5.3902254 0.003781417 0.058996916 0.7453 0.7453 0.7453 AUTHOR Combined EM map of density-modified maps of focused refinements around the region surrounding half of the dimeric Tg molecule and the arm region of a Tg monomer - the model is aligned to this map emd_24181_additional_9.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 251 261 319 220 138 232 319 261 251 169.06999 138.32999 133.03 90.0 90.0 90.0 Z Y X -3.4762664 4.9202266 0.000000000001678 0.21623315 0.53 0.53 0.53 AUTHOR density-modified EM map of the focused refinement on the region surrounding half of the dimeric Tg molecule emd_24181_additional_8.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 121 211 233 358 128 312 233 211 121 123.48999 111.829994 64.13 90.0 90.0 90.0 Z Y X -2.9945762 5.774104 -0.000000000000558 0.28751463 0.53 0.53 0.53 AUTHOR density-modified EM map of the focused refinement on the arm region of a Tg monomer emd_24181_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -0.03286455 0.07672254 0.00042065163 0.0024240825 1.06 1.06 1.06 AUTHOR The first EM half map of the focused refinement on the arm region of a Tg monomer emd_24181_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -0.03459063 0.07650837 0.0012441793 0.002647206 1.06 1.06 1.06 AUTHOR The second EM half map of the focused refinement on the arm region of a Tg monomer emd_24181_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -0.029727662 0.10750731 -0.000078184676 0.002665175 1.06 1.06 1.06 AUTHOR The first EM half map of the focused refinement on the region surrounding half of the dimeric Tg molecule emd_24181_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -0.027697446 0.10869637 -0.00007916164 0.0026638731 1.06 1.06 1.06 AUTHOR The second EM half map of the focused refinement on the region surrounding half of the dimeric Tg molecule emd_24181_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -0.02790652 0.109321505 -0.00010267829 0.0025717532 1.06 1.06 1.06 AUTHOR EM map of the focused refinement on the region surrounding half of the dimeric Tg molecule emd_24181_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -0.8702243 2.595276 0.001899239 0.064339384 1.06 1.06 1.06 AUTHOR EM map of the global consensus refinement - the reference map for subsequent focused refinements emd_24181_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -0.021434378 0.06502657 0.0010079293 0.0020402947 1.06 1.06 1.06 AUTHOR EM map of the focused refinement on the arm region of a Tg monomer emd_24181_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -0.03329558 0.09250848 -0.000004472423 0.003037624 1.06 1.06 1.06 AUTHOR The second EM half map of the global consensus reconstruction emd_24181_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -0.031211806 0.09592337 -0.0000045106804 0.0030382427 1.06 1.06 1.06 AUTHOR The first EM half map of the global consensus reconstruction