<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2416" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2013-07-17</deposition>
         <header_release>2013-08-07</header_release>
         <map_release>2013-10-23</map_release>
         <update>2013-10-23</update>
      </key_dates>
      <title>Negative staining 3D-EM of the HA complex of Botulinum toxin type A</title>
      <authors_list>
         <author>Lee K</author>
         <author>Gu S</author>
         <author>Jin L</author>
         <author>Le TTN</author>
         <author>Cheng LW</author>
         <author>Strotmeier J</author>
         <author>Kruel AM</author>
         <author>Yao G</author>
         <author>Perry K</author>
         <author>Rummel A</author>
         <author>Jin R</author>
      </authors_list>
      <keywords>Botulinum toxin, HA complex</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Lee K</author>
               <author order="2">Gu S</author>
               <author order="3">Jin L</author>
               <author order="4">Le TT</author>
               <author order="5">Cheng LW</author>
               <author order="6">Strotmeier J</author>
               <author order="7">Kruel AM</author>
               <author order="8">Yao G</author>
               <author order="9">Perry K</author>
               <author order="10">Rummel A</author>
               <author order="11">Jin R</author>
               <title>Structure of a bimodular botulinum neurotoxin complex provides insights into its oral toxicity.</title>
               <journal>PLOS PATHOG.</journal>
               <volume>9</volume>
               <first_page>e1003690</first_page>
               <last_page>e1003690</last_page>
               <year>2013</year>
               <external_references type="PUBMED">24130488</external_references>
               <external_references type="DOI">doi:10.1371/journal.ppat.1003690</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>The trimeric HA complex of Botulinum toxin type A</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>The trimeric HA complex of Botulinum toxin type A</name>
            <details>The trimeric HA complex is monodisperse, and stable at both pH2.5 and pH7.4.</details>
            <oligomeric_state>A trimer of 3 HA70, 3 HA17 and 6 HA33</oligomeric_state>
            <number_unique_components>3</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">0.47</experimental>
               <theoretical units="MDa">0.47</theoretical>
               <method>Sedimentation</method>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>Botulinum toxin type A HA17</name>
            <natural_source database="NCBI">
               <organism ncbi="1491">Clostridium botulinum</organism>
               <cellular_location>secreted</cellular_location>
            </natural_source>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_strain>BL21-RIL (DE3)</recombinant_strain>
               <recombinant_plasmid>pQE30, pET28a, pRSFDuet-1</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name>Botulinum toxin type A HA33</name>
            <natural_source database="NCBI">
               <organism ncbi="1491">Clostridium botulinum</organism>
               <cellular_location>secreted</cellular_location>
            </natural_source>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_strain>BL21-RIL (DE3)</recombinant_strain>
               <recombinant_plasmid>pQE30, pET28a, pRSFDuet-1</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="3">
            <name>Botulinum toxin type A HA70</name>
            <natural_source database="NCBI">
               <organism ncbi="1491">Clostridium botulinum</organism>
               <cellular_location>secreted</cellular_location>
            </natural_source>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_strain>BL21-RIL (DE3)</recombinant_strain>
               <recombinant_plasmid>pQE30, pET28a, pRSFDuet-1</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.01</concentration>
               <buffer>
                  <ph>7.6</ph>
                  <details>50mM NaCl, 20mM Tris-HCL</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>Grids with adsorbed protein floated on 1% w/v uranyl formate for 30 seconds</details>
               </staining>
               <grid>
                  <details>300 mesh copper grid with carbon support, glow discharged in vacuumed air</details>
               </grid>
               <vitrification>
                  <cryogen_name>NONE</cryogen_name>
                  <instrument>OTHER</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI F20</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2.0</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.6</nominal_defocus_max>
               <calibrated_magnification>70000.0</calibrated_magnification>
               <specimen_holder_model>SIDE ENTRY, EUCENTRIC</specimen_holder_model>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Objective lens astigmatism was corrected at 70,000 times magnification.</astigmatism>
                  </legacy>
               </alignment_procedure>
               <date>2011-10-04</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GENERIC TVIPS (4k x 4k)</film_or_detector_model>
                     <number_real_images>62</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">40</average_electron_dose_per_image>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Image processing was done using EMAN2.The particles were selected by a semi-automatic selection using e2boxer.</details>
            <ctf_correction>
               <details>Each particle</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C3</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">30.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>EMAN2</name>
                  </software>
               </software_list>
               <details>C3 symmetry was imposed in refinement</details>
               <number_images_used>3746</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="6751">
      <file>emd_2416.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>120</col>
         <row>120</row>
         <sec>120</sec>
      </dimensions>
      <origin>
         <col>-60</col>
         <row>-60</row>
         <sec>-60</sec>
      </origin>
      <spacing>
         <x>120</x>
         <y>120</y>
         <z>120</z>
      </spacing>
      <cell>
         <a units="&#8491;">513.60004</a>
         <b units="&#8491;">513.60004</b>
         <c units="&#8491;">513.60004</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-1.45518267</minimum>
         <maximum>2.65945172</maximum>
         <average>0.00273009</average>
         <std>0.11532168</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">4.28</x>
         <y units="&#8491;">4.28</y>
         <z units="&#8491;">4.28</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.55</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>negative staining 3D-EM of the HA complex of Botulinum toxin A</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2416::::</details>
   </map>
</emd>