2024-05-29 REL RCSB RCSB RCSB 2021-05-15 2022-06-15 2022-06-15 2024-05-29 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM117360 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM111461 United States Howard Hughes Medical Institute (HHMI) 55108534 United States Heritage Medical Research Institute United States Single particle cryo-EM structure of the Chaetomium thermophilum Nup192-Nic96-Nup53-Nup145N complex (Nup192 residues 1-1756; Nic96 residues 240-301; Nup53 31-67; Nup145N 616-683) Petrovic S Samanta D Perriches T Bley CJ Thierbach K Brown B Nie S Mobbs GW Stevens TA Liu X Tomaleri GP Schaus L Hoelz A nuclear pore complex, nucleocytoplasmic transport, alpha-helical solenoid, nuclear pore, TRANSPORT PROTEIN Petrovic S Samanta D Perriches T Bley CJ Thierbach K Brown B Nie S Mobbs GW Stevens TA Liu X Tomaleri GP Schaus L Hoelz A Architecture of the linker-scaffold in the nuclear pore. Science US 376 eabm9798 eabm9798 2022 35679425 doi:10.1126/science.abm9798 1095-9203 0038 SCIEAS 7mvv FULLOVERLAP Nup192-Nic96-Nup53-Nup145N heterotetramer Nup192-Nic96-Nup53-Nup145N heterotetramer 0 1 2 3 4 Chaetomium thermophilum var. thermophilum DSM 1495 .2157 Nucleoporin NUP192 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.200047484 1 Escherichia coli LEVO GPLMSGLNDIFEAQKIEWHEGSAGGSGHMTDLRKLEALQALHAELVAVRQHRFEGLQVLETLLEEQTDAFKALIAKPARD TKDREALGKEPKKLKIGEEEYSLNEDFVNDCLKLADELDLNEKESARILIDCDAEGDVETQSRPLWECGVIRFHQERKYL LDCMRLILEIAADEDIDAGLQESFGVAAEDKIFGIPPPWERNKENQPTQVKKFIPRCMEAMKGVRSMLQCMADKANARNM LQQASLVRPLDNQETLDFSRLSLVEQHECLASILHAAVQRHHATIADFQDFIKILRKWDKYDHFLIHLIPVLAAYITEFG SPEGMGDLQQARRLNDFICKGGDEDSWALPVLGAAVRAWWIAEHNGFYLDDTVQDLRGINLDEEDEQRTKQFLDALKEGA FDFILSVAADCKAQEWQDPSQLGARQWLQRKIPSLPSEPFPFSHFLQHSLMVHLEGFVDATISNLPDVLRKLRTEEDEQR QLRPNHEQDMDLERFLIIISYAYEGRPDAAMSFWEDPDSNLAGFLQWASRRASTPLVSAFCEMLRCLADNEECATAAHNF LLDEGHQASGKMKRSQSLTWSQIFKELEYFTTKVCSERPNPPQASMHRPGRPGADPAEIEPESALMLECYLRLIAKLATE SEIARKRLIMDEDFNLVDTILKLSVGVIPHRLRACIFYVLKALMIRKTHEELDAMWRWVEAWMTNPFSSLPGSQGAPQRI SFLGQTPGPQECMEMMFREFGTGFEQSNAFIQLLTTLLVPPEGLNSLNDSVPFPEWLGSSIRTLGIEPYVDFVFDVFANR TKDISDPSQLRILRLSCLDFVMVCLVTFNEDLIVLGHESNISIDDAMAATNLATYVRLHPFSRVMEWLFNEKVITSLINT IHQDPISLGSASPDSPLVVSILRAIQVMIKALELQETYLHLVRPEVLRYQGEAGVRRKPVANAAYSAFEDGILSHLSLVV DLGKYCNLGHAELTLACLKLLEKISTSSRILSAWSPDSGRLGHRNKAIVQLERNGEGETISASLSASIMATLDPALAASG ENYRVKLAILDFLYACLRATPDQPTIAHQLLGFHCELSKLGIEPKGPFDMQKSLFHSLLNVLITLTVSEEEQGMRGYLVT LKYRVLRILQLLWKSPLSASLVMDELRATNFLFHMLLREVQIQPQLPWDGQLVTGCEFLLSDASLAYIDYLASRAAIFEY IGKELCSVSQNRIPSIKRQIFDALNGQIFVDEEAPLTIPSIFDFFDFINTDYKWEEIPSPHFTYLKDLDLGPCILEHKYA GVHYDIRKAQEILALKRKEYEHSQLATPEFLETVELEEKVLIEWLTVRNRANLLLTARLNLLQAWANLLLVMIESNDFKS TPKMAFLLQALQAILPTLEAFSSLKSDEAFELARVAKVLLWKLDFSQDSDAGLDREQFTVGNLIGDKLFQLFQLCLSAIS QCSGTPELRSLYYSICYRYLTAVVDNDATVAATPASSTIGPTRSVTNARARTLKAITLYGDRLLNVICDDAYGSDTTCQT AAMILLNALVHTSRASSAAGVSPADVDCPIIDALNRLNFIGVLVDSLKEILNEWLAPSSTFDPSLSTNASPSLPIPASPS QQYTSAKLALLLQLCQTRQGAKYVLQANLFRALEQSGVFAADPELVEVDSESGVPRVVALERHYALLVALARVVGAAVTA RGAHNIVQGRKFLTQHRGLVVHVLKKNAGIGGGVVGNSLASSINGGSTATMTRRDEILAQQALEERIEELAEAFMLLITA TGFLEYESEQVPSEQPRAHTTFFH G0S4T0 Nucleoporin NIC96 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.0071739379999999995 1 Escherichia coli LEVO SGTGLGEVDVDTYLSNLQTKTTLSMIADGLERSARDFDAFLEENVTLEWEAQRKRIYQHFGIK G0S024 Nucleoporin NUP53 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.0041736130000000005 1 Escherichia coli LEVO SQQDGSLRSRKANLETGAFGKSTRRTRSKAATPAKRED G0S156 Nucleoporin NUP145N Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.0070779829999999995 1 Escherichia coli LEVO SATPLSGKAKVKSRSILPMYKLSPANASRLVTTPQKRAYGFSFSAYGSPTSPSSSASSTPGAFGQSILS G0SAK3 singleParticle particle 0.5 8.0 150.0 NaCl sodium chloride 20.0 (HOCH2)3CNH2 tris(hydroxymethyl)aminomethane 5.0 C4H10O2S2 dithiothreitol ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.0 3.0 105000.0 NITROGEN GIF Quantum LS GATAN K3 (6k x 4k) 1 4319 100.0 1 2286858
ab initio stochastic gradient descent reconstruction
 C1 3.22 FSC 0.143 CUT-OFF cryoSPARC 484910 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC cryoSPARC emd_24057.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 363.7248 363.7248 363.7248 90.0 90.0 90.0 X Y Z -1.4355282 1.9388669 -0.001523027 0.048745774 1.4208 1.4208 1.4208 0.3 AUTHOR Unsharpened map generated with cryoSPARC NU refine OTHER REAL OTHER REAL emd_24057_msk_1.map emd_24057_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 363.7248 363.7248 363.7248 90.0 90.0 90.0 X Y Z -19.782254999999999 26.955393000000001 -0.0000125727565 0.93387294 1.4208 1.4208 1.4208 AUTHOR Map sharpened with PHENIX Autosharpen model based local sharpening emd_24057_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 363.7248 363.7248 363.7248 90.0 90.0 90.0 X Y Z -2.5675218 2.7602363 0.0026180884 0.042842515 1.4208 1.4208 1.4208 AUTHOR Half-dataset map generated with cryoSPARC emd_24057_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 363.7248 363.7248 363.7248 90.0 90.0 90.0 X Y Z -1.6571467 2.373362 0.002619546 0.04285426 1.4208 1.4208 1.4208 AUTHOR Half-dataset map generated with cryoSPARC