2024-05-29 REL RCSB RCSB RCSB 2021-05-14 2021-11-24 2021-11-24 2024-05-29 Department of Energy (DOE, United States) DE-SC00016240 United States National Science Foundation (NSF, United States) GRFP-1106400 United States Thermotoga maritima encapsulin shell LaFrance BJ Nogales E Encapsulin, Ferritin-like protein, EncFLP, Thermotoga, FMN, Bacterial Nanocompartment, VIRUS LIKE PARTICLE LaFrance BJ Cassidy-Amstutz C Nichols RJ Oltrogge LM Nogales E Savage DF The encapsulin from Thermotoga maritima is a flavoprotein with a symmetry matched ferritin-like cargo protein. Sci Rep UK 11 22810 22810 2021 34815415 doi:10.1038/s41598-021-01932-w 2045-2322 7mu1 FULLOVERLAP 3.3A cryo-EM map of the T. maritima encapsulin shell 3.3A cryo-EM map of the T. maritima encapsulin shell 0 1 Thermotoga maritima 1.83 Maritimacin Thermotoga maritima 0.030369615 1 Escherichia coli BL21(DE3) LEVO MEFLKRSFAPLTEKQWQEIDNRAREIFKTQLYGRKFVDVEGPYGWEYAAHPLGEVEVLSDENEVVKWGLRKSLPLIELRA TFTLDLWELDNLERGKPNVDLSSLEETVRKVAEFEDEVIFRGCEKSGVKGLLSFEERKIECGSTPKDLLEAIVRALSIFS KDGIEGPYTLVINTDRWINFLKEEAGHYPLEKRVEECLRGGKIITTPRIEDALVVSERGGDFKLILGQDLSIGYEDREKD AVRLFITETFTFQVVNPEALILLK Q9WZP2 3.4.-.- FLAVIN MONONUCLEOTIDE 0.00045634399999999997 1 FMN singleParticle particle 2.0 7.4
20 mM Tris-HCl, pH 7.4, 150 mM NaCl and 5 mM 2-mercaptoethanol
 C-flat-1.2/1.3 COPPER 400 GLOW DISCHARGE ETHANE-PROPANE 100 277 FEI VITROBOT MARK IV
blot force.
FEI TITAN FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.5 2.8000000000000003 GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 3838 3710 1 1276 40.0 1
Images were saved in counting mode using leginon software, and subsequently processed in RELION.
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1000 particles were manually selected from random micrographs. 2D classification was performed on these 1000 particles, and 2D classes were used for relion auto picking
 3DKT
Original T. maritima crystal structure from Sutter et al 'molmap' function in Chimera was used to generate surface model. Initial model was lowpass filtered to 30A for initial reconstruction, and once high-resolution was achieved, a 5A model was used to assure the correct handedness.
 1 I 3.3 FSC 0.143 CUT-OFF RELION 3.1 38952 MAXIMUM LIKELIHOOD RELION 3.1 MAXIMUM LIKELIHOOD RELION 3.1 emd_24001.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 419.84 419.84 419.84 90.0 90.0 90.0 X Y Z -0.035822354 0.07585681 0.0004622815 0.003631274 0.82 0.82 0.82 0.02 AUTHOR Final cryo-EM map for the T maritima encapsulin shell 3DKT A PDB experimental model FLEXIBLE FIT 38.0 emd_24001_msk_1.map