2026-08-12 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond em_3d_fitting_list em_admin pdbx_entry_details pdbx_initial_refinement_model pdbx_modification_feature pdbx_validate_close_contact struct_conn struct_conn_type _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_admin.last_update _pdbx_entry_details.has_protein_modification _struct_conn_type.id REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY em_admin pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_struct_conn_angle pdbx_validate_close_contact struct_conn struct_conn_type _em_admin.last_update _struct_conn_type.id RCSB RCSB 2021-04-27 2022-02-02 2022-02-02 2026-08-12 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01-GM123233 United States National Institutes of Health/National Cancer Institute (NIH/NCI) CA196539 United States National Institutes of Health/National Institute on Aging (NIH/NIA) AG031862 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) U24GM129547 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) S10OD023592 United States Yang C Fujiwara R PIC, TFIIH, transcription, ITC, RNA polymerase II Yang C Fujiwara R Kim HJ Basnet P Zhu Y Gorbea Colon JJ Steimle S Garcia BA Kaplan CD Murakami K Mol.Cell US 82 660 676.e9 2022 35051353 doi:10.1016/j.molcel.2021.12.020 1097-2765 2168 MOCEFL EMD-23904 other EM volume EMD-23905 other EM volume EMD-23906 other EM volume EMD-23908 other EM volume 7ml3 FULLOVERLAP EMDB EMD-23907 associated EM volume EMDB EMD-23904 other EM volume EMDB EMD-23905 other EM volume EMDB EMD-23906 other EM volume EMDB EMD-23908 other EM volume General transcription factor TFIIH (weak binding) General transcription factor TFIIH (weak binding) 0 1 2 3 4 5 6 7 8 9 10 Saccharomyces cerevisiae BJ4_G0050160.mRNA.1.CDS.1 Saccharomyces cerevisiae 0.038188438 1 LEVO MLMDEYEENKDMCPICKTDRYLSPDVKFLVNPECYHRICESCVDRIFSLGPAQCPYKGCDKILRKNKFKTQIFDDVEVEK EVDIRKRVFNVFNKTIDDFNGDLVEYNKYLEEVEDIIYKLDHGIDVAKTEEKLRTYEELNKQLIMNNLERSRTEIESFEQ RQKFEKEMKLKKRLLERQIEEEERMNKEWTKKEIVNRLSTTTQDINETIEGVKNTVKLKKSSARRKLEELNRVLKNNPYF NSNVNVQNSRLKDAVPFTPFNGDREAHPRFTLKGSVYNDPFIKDLEHRKEFIASGFNTNYAYERVLTEAFMGLGCVISEE L A0A7I9BTI9 RNA polymerase II transcription factor B subunit 2 Saccharomyces cerevisiae 0.058602312 1 LEVO MSDYSLKHSVTQYLEEIPQQVQNRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQNAIKS MKSLHLLIPNKSSGTLMINLNPTFKISLRNALTGGEVQNSFGVVVEENVVSLDLLDEYSANKWETILHFMVGTPLAKIPS EKVLNLLKHSKLMEEVNSTGEFKITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKID ALSETQRIMLQDMRDYGLVFQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNREEPSVNEDGANGKSTTDITT SDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYL ETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGV LLWKDDKKKKFFISKEGNSQVLDFAKRKLKKKQ A0A6A5Q2X3 General transcription and DNA repair factor IIH helicase subunit XPD Saccharomyces cerevisiae 0.089899047 1 LEVO MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQMHYPEHRKIIYCSRTMSEIE KALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPEVSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHE NLYNIEVEDYLPKGVFSFEKLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHNI DNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADILTDQEEPFVETPVLPQDLLTEA IPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSFLQHLKQLTFIERKPLRFCSERLSLLVRTLEVTEVEDFTALK DIATFATLISTYEEGFLLIIEPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKTVLQ KSYAMTLAKKSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGIL DEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILLSVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLE FMRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSRKRSQLPKWIAQGLSDADLNLSTDMAISNTKQF LRTMAQPTDPKDQEGVSVWSYEDLIKHQNSRKDQGGFIENENKEGEQDEDEDEDIEMQ A0A6A5Q1C1 3.6.4.12 Tfb1 Saccharomyces cerevisiae 0.058167836 1 LEVO MSHSGAAIFEKVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATPASSEKMMLRLIGKVDESKKRKDNEGNEV VPKPQRHMFSFNNRTVMDNIKMTLQQIISRYKDADIYEEKRRREESAQHTETPMSSSSVTAGTPTPHLDTPQLNNGAPLI NTAKLDDSLSKEKLLTNLKLQQSLLKGNKVLMKVFQETVINAGLPPSEFWSTRIPLLR(UNK)FAL(UNK)(UNK)SQK (UNK)GP(UNK)(UNK)V(UNK)(UNK)(UNK)(UNK)(UNK)P(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)NLSREKILNIFENYPIVKKAYTDNVPKNFKEPEFWARFFSSKLFRKL(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)L (UNK)(UNK)(UNK)(UNK)(UNK)F(UNK)(UNK)K(UNK)(UNK)(UNK)(UNK)LLHPVKKII(UNK)LDGNI (UNK)DDPVVRG(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)VDILKGMNRLSEKMIM(UNK)LK(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)RVIT(UNK)IKINAKQA(UNK)H(UNK)(UNK)(UNK)EVKSTLP IDLLESCRMLHTTCCEFLKHFAIHQKQASTVKKLYNHLKDCIEKLNELFQDVLNGDGESMSNTCTAYLKPVLNSITLATH KYDEYFNEYNNNSN General transcription and DNA repair factor IIH subunit TFB4 Saccharomyces cerevisiae 0.037430347999999995 1 LEVO MDAISDPTFKHARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAYS QGIKYLYPESTSALKASESENKTRSDLKIINS(UNK)(UNK)YRRFRNVDETLVEEIYKLFELEKKQIEQNSQRSTLAGA MSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATN GVYLHVESTEGLIQYLATAMFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLSIIPPGNKCPACDSQF DEHVIAKLKRKPVVPRLKAKKKVTKP A0A7I9C5C2 General transcription and DNA repair factor IIH Saccharomyces cerevisiae 0.05202466399999999 1 LEVO MAPVVISESEEDEDRVAITRRTKRQVHFDGEGDDRVDQQQQQHSSSHRDRDKHVQRKKKKRLSNRNLQGSNGGYAWEDEI KRSWDLVKVDDEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEF FDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLS TTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTPLPVNKINKGFTLV KMGFPTRIFEDTPTFCSCHSKLVYGGYFCPNCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFAEVPTTEKFRS EDCFSCQSRFP(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)SRYR CEDCKQEFCVDCDVFIHEILHNCPGCESKPVIT A0A7I9FQL5 General transcription and DNA repair factor IIH subunit TFB5 Saccharomyces cerevisiae 0.00824349 1 LEVO MARARKGALVQCDPSIKALILQIDAKMSDIVLEELDDTHLLVNPSKVEFVKHELNRLLSKNIYNPMDEEENQ Q3E7C1 General transcription and DNA repair factor IIH helicase subunit XPB Saccharomyces cerevisiae 0.095461664 1 LEVO MTDVEGYQPKSKGKIFPDMGESFFSSDEDSPATDAEIDENYDDNRETSEGRGERDTGAMVTGLKKPRKKTKSSRHTAADS SMNQMDAKDKALLQDTNSDIPADFVPDSVSGMFRSHDFSYLRLRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTI AEPISRPSHIHEYKITAYSLYAAVSVGLETDDIISVLDRLSKVPVAESIINFIKGATISYGKVKLVIKHNRYFVETTQAD ILQMLLNDSVIGPLRIDSDHQVQPPEDVLQQQLQQTAGKPATNVNPNDVEAVFSAVIGGDNEREEEDDDIDAVHSFEIAN ESVEVVKKRCQEIDYPVLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAA CTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVSTYSMVANTRNRSHDSQKVMDFLTGR EWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCP MTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKIIVFSDNVYALQEYALKMGKPFIYGSTPQQERMNIL QNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAKRRNDEGFNAFFYSLVSKDTQEMYYST KRQAFLVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIEVGDDADNSVGRGSNGHKRFKSKAVRG EGSLSGLAGGEDMAYMEYSTNKNKELKEHHPLIRKMYYKNLKK Q00578 3.6.4.12 non-template strand DNA Saccharomyces cerevisiae 0.009348032999999999 1 (DC)(DA)(DT)(DT)(DG)(DA)(DT)(DG)(DA)(DT)(DG)(DT)(DG)(DA)(DC)(DA)(DT)(DT)(DG)(DA) (DT)(DG)(DA)(DT)(DG)(DT)(DG)(DA)(DT)(DG) DNA template strand DNA Saccharomyces cerevisiae 0.009094907 1 (DC)(DA)(DT)(DC)(DA)(DC)(DA)(DT)(DC)(DA)(DT)(DC)(DA)(DA)(DT)(DG)(DT)(DC)(DA)(DC) (DA)(DT)(DC)(DA)(DT)(DC)(DA)(DA)(DT)(DG) DNA ZINC ION 6.5409e-05 7 ZN IRON/SULFUR CLUSTER 0.00035163999999999996 1 SF4 singleParticle particle 7.6 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K3 BIOQUANTUM (6k x 4k) 45.0 1 CTFFIND 4.1 PHASE FLIPPING AND AMPLITUDE CORRECTION 7.6 FSC 0.143 CUT-OFF 101497 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD RELION 3.1 5OQJ PDB experimental model REAL