<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2381" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2013-05-21</deposition>
         <header_release>2013-05-29</header_release>
         <map_release>2013-06-26</map_release>
         <update>2013-07-03</update>
      </key_dates>
      <title>The structure and super-organization of acetylcholine receptor-rapsyn complexes; class C</title>
      <authors_list>
         <author>Zuber B</author>
         <author>Unwin N</author>
      </authors_list>
      <keywords>neurotransmitter receptor, clustering, synapse, neuromuscular junction, nicotinic, acetylcholine receptor, rapsyn, 43K, electric organ</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Zuber B</author>
               <author order="2">Unwin N</author>
               <title>Structure and superorganization of acetylcholine receptor-rapsyn complexes.</title>
               <journal>PROC.NAT.ACAD.SCI.USA</journal>
               <volume>110</volume>
               <first_page>10622</first_page>
               <last_page>10627</last_page>
               <year>2013</year>
               <external_references type="PUBMED">23754381</external_references>
               <external_references type="DOI">doi:10.1073/pnas.1301277110</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>4boo</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>Postsynaptic membrane isolated from Torpedo marmorata electric organ</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Postsynaptic membrane isolated from Torpedo marmorata electric organ</name>
            <details>class average</details>
            <oligomeric_state>acetylcholine receptors bound to two pairs of rapsyns</oligomeric_state>
            <number_unique_components>2</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">0.474</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="AChR">nicotinic acetylcholine receptor</name>
            <natural_source database="NCBI">
               <organism ncbi="7788">Torpedo marmorata</organism>
               <synonym_organism>Marble electric ray</synonym_organism>
               <tissue>Electric organ</tissue>
               <cell>Electrocyte</cell>
               <cellular_location>Postsynaptic plasma membrane</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.290</experimental>
               <theoretical units="MDa">0.280</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               <external_references type="INTERPRO">IPR002394</external_references>
            </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name synonym="43 kDa receptor-associated protein of the synapse">Rapsyn</name>
            <natural_source database="NCBI">
               <organism ncbi="7788">Torpedo marmorata</organism>
               <synonym_organism>Marble electric ray</synonym_organism>
               <tissue>Electric organ</tissue>
               <cell>Electrocyte</cell>
               <cellular_location>Postsynaptic plasma membrane</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.043</experimental>
               <theoretical units="MDa">0.046</theoretical>
            </molecular_weight>
            <details>the number of copies is suggested by the volume of the rapsyn densities</details>
            <number_of_copies>4</number_of_copies>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               <external_references type="GO">GO:0007268</external_references>
               <external_references type="GO">GO:0005515</external_references>
               <external_references type="GO">GO:0008270</external_references>
               <external_references type="GO">GO:0033130</external_references>
               <external_references type="GO">GO:0005856</external_references>
               <external_references type="GO">GO:0030054</external_references>
               <external_references type="GO">GO:0045202</external_references>
               <external_references type="GO">GO:0045211</external_references>
               <external_references type="INTERPRO">IPR001237</external_references>
               <external_references type="INTERPRO">IPR019568</external_references>
               <external_references type="INTERPRO">IPR011990</external_references>
               <external_references type="INTERPRO">IPR013026</external_references>
               <external_references type="INTERPRO">IPR013083</external_references>
               <external_references type="INTERPRO">IPR001841</external_references>
               <external_references type="INTERPRO">IPR019734</external_references>
               <external_references type="INTERPRO">IPR001440</external_references>
               <external_references type="INTERPRO">IPR018293</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>subtomogramAveraging</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <subtomogram_averaging_preparation preparation_id="1">
               <buffer>
                  <ph>7.4</ph>
                  <details>400 mM NaCl, 20 mM phosphate buffer, leupeptin 0.3 mg/l, pepstatin 1 mg/l</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>unstained</details>
               </staining>
               <grid>
                  <details>300 mesh copper grid with lacy carbon support, glow discharge in amylamine atmosphere</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">90</chamber_humidity>
                  <chamber_temperature units="K">78</chamber_temperature>
                  <instrument>HOMEMADE PLUNGER</instrument>
                  <method>blot from the carbon side</method>
               </vitrification>
            </subtomogram_averaging_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <subtomogram_averaging_microscopy microscopy_id="1">
               <microscope>FEI POLARA 300</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2</nominal_cs>
               <nominal_defocus_min units="&#181;m">3.0</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">6.0</nominal_defocus_max>
               <nominal_magnification>69000.0</nominal_magnification>
               <calibrated_magnification>80213.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_min units="K">80</temperature_min>
                  <temperature_max units="K">95</temperature_max>
                  <temperature_average units="K">85</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>objective lens astigmatism was corrected at 69,000 times magnification</astigmatism>
                  </legacy>
               </alignment_procedure>
               <specialist_optics>
                  <energy_filter>
                     <name>Gatan</name>
                     <lower_energy_threshold units="eV">0.0</lower_energy_threshold>
                     <upper_energy_threshold units="eV">20.0</upper_energy_threshold>
                  </energy_filter>
               </specialist_optics>
               <details>dual tilt axis tomography</details>
               <date>2008-07-25</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GATAN ULTRASCAN 4000 (4k x 4k)</film_or_detector_model>
                     <digitization_details>
                        <sampling_interval units="&#181;m">15</sampling_interval>
                     </digitization_details>
                     <number_real_images>142</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">50</average_electron_dose_per_image>
                     <details>dual axis tilt series</details>
                     <bits_per_pixel>16.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <tilt_series>
                  <axis1>
                     <min_angle units="deg">-70</min_angle>
                     <max_angle units="deg">70</max_angle>
                  </axis1>
               </tilt_series>
            </subtomogram_averaging_microscopy>
         </microscopy_list>
         <subtomogram_averaging_processing image_processing_id="1">
            <final_reconstruction>
               <algorithm>OTHER</algorithm>
               <software_list>
                  <software>
                     <name>IMOD, PRIISM/IVE</name>
                  </software>
               </software_list>
               <number_subtomograms_used>3564</number_subtomograms_used>
            </final_reconstruction>
            <final_three_d_classification>
               <number_classes>5</number_classes>
            </final_three_d_classification>
         </subtomogram_averaging_processing>
         <subtomogram_averaging_processing image_processing_id="2">
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">42.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>XMIPP, ML, TOMO</name>
                  </software>
               </software_list>
               <number_subtomograms_used>3564</number_subtomograms_used>
            </final_reconstruction>
            <final_three_d_classification>
               <number_classes>5</number_classes>
            </final_three_d_classification>
         </subtomogram_averaging_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="845">
      <file>emd_2381.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>60</col>
         <row>60</row>
         <sec>60</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>60</x>
         <y>60</y>
         <z>60</z>
      </spacing>
      <cell>
         <a units="&#8491;">448.8</a>
         <b units="&#8491;">448.8</b>
         <c units="&#8491;">448.8</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.62422496</minimum>
         <maximum>1.09199798</maximum>
         <average>0.0</average>
         <std>0.06596602</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">7.48</x>
         <y units="&#8491;">7.48</y>
         <z units="&#8491;">7.48</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.248</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Acetylcholine receptor with two pairs of rapsyn bound at approximately 72 degrees apart</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2381::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <initial_model>
               <access_code>2BG9</access_code>
               <chain>
                  <chain_id>A</chain_id>
               </chain>
               <chain>
                  <chain_id>B</chain_id>
               </chain>
               <chain>
                  <chain_id>C</chain_id>
               </chain>
               <chain>
                  <chain_id>D</chain_id>
               </chain>
               <chain>
                  <chain_id>E</chain_id>
               </chain>
            </initial_model>
            <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>Chimera</name>
               </software>
            </software_list>
            <refinement_space>REAL</refinement_space>
         </modelling>
      </modelling_list>
      <figure_list>
         <figure>
            <file>emd_2381.tif</file>
         </figure>
      </figure_list>
   </interpretation>
</emd>