<?xml version="1.0" encoding="UTF-8"?>
<emd emdb_id="EMD-23562" version="3.0.2.8">
    <admin>
        <current_status>
            <date>2023-01-11</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2021-03-02</deposition>
            <header_release>2022-03-09</header_release>
            <map_release>2022-03-09</map_release>
            <update>2023-01-11</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)</funding_body>
                <code>75N93019C00051</code>
                <country>United States</country>
            </grant_reference>
        </grant_support>
        <title>Negative stain EM map of 1E01 Fab in complex with N2 Singapore16</title>
        <authors_list>
            <author>Turner HL</author>
            <author>Ward AB</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author ORCID="0000-0001-6792-7650" order="1">Stadlbauer D</author>
                    <author ORCID="0000-0002-7450-6624" order="2">McMahon M</author>
                    <author order="3">Turner HL</author>
                    <author ORCID="0000-0002-6021-3740" order="4">Zhu X</author>
                    <author ORCID="0000-0002-6374-0343" order="5">Wan H</author>
                    <author order="6">Carreno JM</author>
                    <author order="7">O'Dell G</author>
                    <author order="8">Strohmeier S</author>
                    <author order="9">Khalil Z</author>
                    <author order="10">Luksza M</author>
                    <author ORCID="0000-0002-1376-6916" order="11">van Bakel H</author>
                    <author ORCID="0000-0002-6416-5096" order="12">Simon V</author>
                    <author ORCID="0000-0002-6129-2532" order="13">Ellebedy AH</author>
                    <author ORCID="0000-0002-6469-2419" order="14">Wilson IA</author>
                    <author ORCID="0000-0001-7153-3769" order="15">Ward AB</author>
                    <author ORCID="0000-0003-4121-776X" order="16">Krammer F</author>
                    <title>Antibodies targeting the neuraminidase active site inhibit influenza H3N2 viruses with an S245N glycosylation site.</title>
                    <journal_abbreviation>Nat Commun</journal_abbreviation>
                    <country>UK</country>
                    <volume>13</volume>
                    <first_page>7864</first_page>
                    <last_page>7864</last_page>
                    <year>2022</year>
                    <external_references type="PUBMED">36543789</external_references>
                    <external_references type="DOI">doi:10.1038/s41467-022-35586-7</external_references>
                    <external_references type="ISSN">2041-1723</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-23562</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>1E01 antibody-Neuraminidase N2 Singapore16 complex</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>1E01 antibody-Neuraminidase N2 Singapore16 complex</name>
                <parent>0</parent>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="3">
                <name>1E01 antibody</name>
                <parent>1</parent>
                <natural_source database="NCBI">
                    <organism ncbi="11320">Influenza A virus</organism>
                </natural_source>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="2">
                <name>Neuraminidase N2 Singapore16</name>
                <parent>1</parent>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>uranyl formate</material>
                    </staining>
                    <grid>
                        <model>Homemade</model>
                        <material>COPPER</material>
                        <mesh>400</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <time units="s">25</time>
                        </pretreatment>
                    </grid>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI F20</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>TVIPS TEMCAM-F416 (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">25.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">14.9</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0</version>
                        </software>
                    </software_list>
                    <number_images_used>40555</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>OTHER</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0</version>
                        </software>
                    </software_list>
                    <details>bayesian polishing</details>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>OTHER</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0</version>
                        </software>
                    </software_list>
                    <details>bayesian poilishing</details>
                </final_angle_assignment>
                <final_three_d_classification>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0</version>
                        </software>
                    </software_list>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="16385">
        <file>emd_23562.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>160</col>
            <row>160</row>
            <sec>160</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>160</x>
            <y>160</y>
            <z>160</z>
        </spacing>
        <cell>
            <a units="Å">283.2</a>
            <b units="Å">283.2</b>
            <c units="Å">283.2</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.03598675</minimum>
            <maximum>0.070487246</maximum>
            <average>0.00015243658</average>
            <std>0.005923321</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.7700001</x>
            <y units="Å">1.7700001</y>
            <z units="Å">1.7700001</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.0152</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-23562::::</label>
        <annotation_details>Negative stain EM map of 1E01 Fab in complex with N2 Singapore16</annotation_details>
    </map>
</emd>
