2023-08-16 REL RCSB RCSB RCSB 2021-02-18 2021-04-14 2021-04-14 2023-08-16 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01GM135651 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) 5T32GM008382 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) U24GM129547 United States American Cancer Society IRG-15-173-2 United States National Institutes of Health/National Cancer Institute (NIH/NCI) P01CA092584 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01GM047251 United States He Y Chen S NHEJ, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex Chen S Lee L Naila T Fishbain S Wang A Tomkinson AE Lees-Miller SP He Y Nature UK 593 294 298 2021 33854234 doi:10.1038/s41586-021-03458-7 1476-4687 0006 NATUAS 7lsy FULLOVERLAP Short-range synaptic complex of NHEJ Short-range synaptic complex of NHEJ 0 1 2 3 4 5 6 7 8 9 10 0.72 X-ray repair cross-complementing protein 6 Homo sapiens 0.068872875 2 unidentified baculovirus LEVO MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDR DLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFK MSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQ IYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRY TPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFEN PVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKVTKRKHDNEGSGSKRPKVEYS EEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL P12956 3.6.4.- X-ray repair cross-complementing protein 5 Homo sapiens 0.08281243799999999 2 unidentified baculovirus LEVO MVRSGNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVH RHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDIS LQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLRKLCVFKKI ERHSIHWPCRLTIGSNLSIRIAAYKSILQERVKKTWTVVDAKTLKKEDIQKETVYCLNDDDETEVLKEDIIQGFRYGSDI VPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVFAARDDEAAAVALSSLIHALDDLDMVAIVRYAYDKR ANPQVGVAFPHIKHNYECLVYVQLPFMEDLRQYMFSSLKNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTT KIPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHED GPTAKKLKTEQGGAHFSVSSLAEGSVTSVGSVNPAENFRVLVKQKKASFEEASNQLINHIEQFLDTNETPYFMKSIDCIR AFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGITLITKEEASGSSVTAEEAKKFLAPKDKPSGDTAAVFE EGGDVDDLLDMI P13010 3.6.4.- DNA (26-MER) Homo sapiens 0.007936150999999999 1 (DT)(DA)(DT)(DA)(DT)(DA)(DC)(DT)(DA)(DA)(DG)(DA)(DA)(DC)(DT)(DT)(DC)(DT)(DG)(DA) (DC)(DT)(DG)(DT)(DT)(DC) DNA DNA (5'-D(P*GP*TP*TP*CP*TP*TP*AP*GP*TP*AP*TP*AP*TP*A)-3') Homo sapiens 0.004284812 1 (DG)(DT)(DT)(DC)(DT)(DT)(DA)(DG)(DT)(DA)(DT)(DA)(DT)(DA) DNA DNA repair protein XRCC4 Homo sapiens 0.038337703 4 unidentified baculovirus LEVO MERKISRIHLVSEPSITHFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGAGP ADVYTFNFSKESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQG RFEKCVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIKQEGETAICSEMTADRDPVYDESTDEESENQ TDLSGLASAAVSKDDSIISSLDVTDIAPSRKRRQRMQRNLGTEPKMAPQENQLQEKENSRPDSSLPETSKKEHISAENMS LETLRNSSPEDLFDEI Q13426 Non-homologous end-joining factor 1 Homo sapiens 0.033372233999999994 2 Escherichia coli LEVO MEELEQGLLMQPWAWLQLAENSLLAKVFITKQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAAFLCHLDNLL RPLLKDAAHPSEATFSCDCVADALILRVRSELSGLPFYWNFHCMLASPSLVSQHLIRPLMGMSLALQCQVRELATLLHMK DLEIQDYQESGATLIRDRLKTEPFEENSFLEQFMIEKLPEACSIGDGKPFVMNLQDLYMAVTTQEVQVGQKHQGAGDPHT SNSASLQGIDSQCVNQPEQLVSSAPTLSAPEKESTGTSGPLQRPQLSKVKRKKPRGLFS Q9H9Q4 DNA (5'-D(P*TP*AP*TP*AP*TP*AP*CP*TP*AP*AP*GP*AP*AP*C)-3') Homo sapiens 0.00427183 1 (DT)(DA)(DT)(DA)(DT)(DA)(DC)(DT)(DA)(DA)(DG)(DA)(DA)(DC) DNA DNA (26-MER) Homo sapiens 0.007964145 1 (DC)(DG)(DT)(DT)(DT)(DC)(DA)(DT)(DT)(DG)(DT)(DT)(DG)(DT)(DT)(DC)(DT)(DT)(DA)(DG) (DT)(DA)(DT)(DA)(DT)(DA) DNA DNA (5'-D(P*CP*AP*AP*TP*GP*AP*AP*AP*CP*GP*GP*AP*AP*CP*AP*GP*TP*CP*AP*G)-3') Homo sapiens 0.006185046 1 (DC)(DA)(DA)(DT)(DG)(DA)(DA)(DA)(DC)(DG)(DG)(DA)(DA)(DC)(DA)(DG)(DT)(DC)(DA)(DG) DNA DNA ligase 4 Homo sapiens 0.10412495299999999 2 unidentified baculovirus LEVO MAASQTSQTVASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERM AYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCLQKGSLTIQQVNDLLDSIASNNS AKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDISI TLFSAFKPMLAAIADIEHIEKDMKHQSFYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFK ADIQICILDGEMMAYNPNTQTFMQKGTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRI EIVQKTQAHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSRGGMM SHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKPFHRKAPPSSILCGTEKPEVYIEPCNSVIVQIK AAEIVPSDMYKTGCTLRFPRIEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHLYIGGDDEPQEKKRKAAPKMKKVIGI IEHLKAPNLTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIILSNKHDV VKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLE YRYSWDCSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRR TFKRKFKILKESWVTDSIDKCELQEENQYLI P49917 6.5.1.1 singleParticle particle 7.9 10.0 HEPES 50.0 KCl Potassium chloride 10.0 MgCl2 Magnesium chloride 2.5 glycerol 0.05 NP-40 Quantifoil R3.5/1 COPPER 200 GRAPHENE OXIDE CONTINUOUS 200.0 GLOW DISCHARGE 10 AIR 101.325 ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM DARK FIELD FIELD EMISSION GUN 300 100.0 2.7 1.5 4.0 30000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) 11520 8184 2 32723 0.0426 46.0 1 1766936 Negative staining map reconstructed ab-initio from CryoSPARC 1 C1 FOURIER SPACE 8.4 FSC 0.143 CUT-OFF RELION 3.1 175866 MAXIMUM LIKELIHOOD EMAN cryoSPARC MAXIMUM LIKELIHOOD RELION 3.1 10 180000.0 RELION 3.1 RIGID BODY FIT Correlation coefficient REAL