2024-03-06 REL RCSB RCSB RCSB 2021-02-18 2021-04-14 2021-04-14 2024-03-06 National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI) DP5-OD019800 United States Cryo-EM structure of 13S proteasome core particle assembly intermediate purified from Pre3-1 proteasome mutant (G34D) Schnell HM Walsh Jr RM core particle, complex, assembly intermediate, HYDROLASE Schnell HM Walsh Jr RM Rawson S Kaur M Bhanu MK Tian G Prado MA Guerra-Moreno A Paulo JA Gygi SP Roelofs J Finley D Hanna J Structures of chaperone-associated assembly intermediates reveal coordinated mechanisms of proteasome biogenesis. Nat.Struct.Mol.Biol. US 28 418 425 2021 33846632 doi:10.1038/s41594-021-00583-9 1545-9985 7lsx FULLOVERLAP 13S 13S 0 1 2 3 4 5 6 7 8 9 10 11 12 13
Abundant sub-20S particle that is naturally enriched in Pre3-1 mutant (G34D) was purified via C-terminal Pre1-TEV-ProA affinity tag inserted at the endogenous locus.
Saccharomyces cerevisiae S288C Proteasome subunit alpha type-1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.02803383 1 LEVO MSGAAAASAAGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIG MVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPA GYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAEN IEERLVAIAEQD P21243 3.4.25.1 Proteasome subunit alpha type-2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.027191828 1 LEVO MTDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGP DYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWK ATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTS QEINDRLEAL P23639 3.4.25.1 Proteasome subunit alpha type-3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.02874823 1 LEVO MGSRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGL TADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGW KAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILV KTGITKKDEDEEADEDMK P23638 3.4.25.1 Proteasome subunit alpha type-4 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.028478111 1 LEVO MSGYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNA DSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWS AQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQEK QEQQEQDKKKKSNH P40303 3.4.25.1 Proteasome subunit alpha type-5 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.028649085999999997 1 LEVO MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSG LTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEP SGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELI KELKEKEAAESPEEADVEMS P32379 3.4.25.1 Proteasome subunit alpha type-6 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.025634 1 LEVO MFRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPD ARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTA IGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI P40302 3.4.25.1 Proteasome subunit alpha type-7 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.031575068 1 LEVO MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSG LIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGY KGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAI DFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGDIHLE P21242 3.4.25.1 Proteasome maturation factor UMP1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.016777766 1 LEVO MNIVPQDTFKSQVSTDQDKSVLSSAVPSLPDTLRQQEGGAVPLSTQLNDRHPLESTLKNWETTQRQRQMEQYRQIFGIAE PMKRTMEMEIVNRTDFNPLSTNGSIHRDILLNKECSIDWEDVYPGTGLQASTMVGDDVHSKIEKQLGI P38293 Proteasome subunit beta type-2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.028299888999999998 1 LEVO MAGLSFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAAD TEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGS LAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTA VLKESIVNICDIQEEQVDITA P25043 3.4.25.1 Proteasome subunit beta type-3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.022627842 1 LEVO MSDPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEER AIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP EDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD P25451 3.4.25.1 Proteasome subunit beta type-4 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.022545675999999997 1 LEVO MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDL LKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQAQ P22141 3.4.25.1 Proteasome chaperone 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.030718073999999998 1 LEVO MLFKQWNDLPEPKHLLDLPEISKNLQSLEVCPVPKVEFPQDLDVPQYSTAVITTKIMNPLFPKNLLQLTSIGEIKTTLTV KSPSLPQSSGKHSWNYDENFPNEVDPDQKNDTADETVYGFSFPIYSFGKTLLFSMEENFISISPIFGNMISRSIISQLAQ FSPDIIVIGTSDKIASMKVMTENECTLQPPEFITGFIGSVLTQLIVGPSKGLKFKCLVAPSEGPNGFEKLSLSDMGSLVD LCGQWLGFEPSRYSEECYRLWRCDSAAIGAQSGLYI Q05778 Proteasome assembly chaperone 2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ATCC 204508 / S288c 0.030762895 1 LEVO MSCLVLPLVSVGNIPQLSIDWLLNSQANEWEYLEALDSKYLVEFVGPLDRPEDGSDSLYKDADMKYSSALEVFYNKKRGL FAIQQRTPLVSVNYLNNFIVEIILPFLSKYNISEICIWDSLYAMEDENGVIVRPQEVYSLGEFYFDDEAELLSNLHLNDQ ESMVNNWLHFTPTSFQDKISVDQPIFKILFQILNASQRPKALRSIKYCSCLANEGDNSLDSQQFLQWIISQKVIKNAPPI VKFVRPISWQGAYGMADARDKFVDLYN P36040 singleParticle particle 4.5 7.5 50.0 Tris Buffer 1.0 EDTA 100.0 NaCl Sodium Chloride 1.0 Fluorinated Fos-Choline
Fluorinated Fos-Choline was added to the sample immediately prior to deposition on a grid for plunge freezing.
 ETHANE 100 295.15 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 81000.0 47169.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 25 GATAN K3 BIOQUANTUM (6k x 4k) 1 20657 2.4 55.94 1 1633892 C1 3.61 FSC 0.143 CUT-OFF cryoSPARC 2.15.0 76731 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_23508.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -1.0050771 2.0005329 0.0011492214 0.050549578 1.06 1.06 1.06 0.5 EMDB Map of 13S complex 7LS6 PDB experimental model AB INITIO MODEL REAL emd_23508_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -1.8889265 1.8613558 0.0020003812 0.22391616 1.06 1.06 1.06 AUTHOR Half Map 2 for 13S Complex emd_23508_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 381.59998 381.59998 381.59998 90.0 90.0 90.0 X Y Z -1.7152631 2.0220528 0.0019806125 0.22386445 1.06 1.06 1.06 AUTHOR Half Map 1 for 13S Complex