2024-03-06
REL
RCSB
RCSB
RCSB
2021-02-09
2021-03-17
2021-03-17
2024-03-06
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM105691
United States
cryoEM structure DrdV-DNA complex
Shen BW
Stoddard BL
inhibitor, Complex, endonuclease, methyl transferase, TypeIIL RM system, HYDROLASE, HYDROLASE-DNA complex
Shen BW
Quispe JD
Luyten Y
McGough BE
Morgan RD
Stoddard BL
Coordination of phage genome degradation versus host genome protection by a bifunctional restriction-modification enzyme visualized by CryoEM.
Structure
UK
29
521
530.e5
2021
33826880
doi:10.1016/j.str.2021.03.012
0969-2126
2005
STRUE6
7lo5
FULLOVERLAP
DrdV-DNA tetramer II
DrdV-DNA tetramer II
0
1
2
3
DrdV-DNA complex after SEC Biorad 650 fractionation
Deinococcus wulumuqiensis 479
0.45
Site-specific DNA-methyltransferase (adenine-specific)
Deinococcus wulumuqiensis
0.11825685899999999
4
Escherichia coli
LEVO
MSLQLVKKFQKRLEDIVAYGGTRNESSVRAAFQQLLSDWAEGSGLRLITEVTQKAVAGNNVRPDGTLKDSLQQSRGYWES
KDEADTLDDEIQKKLAKGYPRDNIIFEDSRLAVLMQNGEEVQRVDMGDAGALAGLLKLFFEFEPPQVLEFRKAVDHFKDE
MPHLLKILREAADAAEQKADYRGERDHFVEIAKEAINPDFSPRDAREMLIQHILTGDLFTSVFDNAQYHEDNNIAQQLQQ
LAATFYKGPVKRDIAERTKRYYGAIQAAAAQIADHHEKQRFLKALYENFYRAYNPAGAERLGIFYTPGEIVRFMIEATDT
LLEKHFQKELADKGVEILDPATGTGTFITELIDFLPKAKLEQKYREELHCNELALLPYYIANLNIEATYAQKMGRYEEFR
NIVLVDTLDNTGFGVHGQQSGLFGSVTAENLERAKRQNARPVRVIIGNPPYRANQANENDNNKNREYKEIDRRIKATYVA
ASTAQKTKLYDMYSRFLRWATDRLKEDGIVAFVSNSSFIDSRTFDGFRKEVVKDFDHIYILDMKGNANTSGERRKREGGN
VFNDQIKVGVAVYFLVRSAAGKRKSKDTKIWYHAVPDFWRAREKLEWLKTTKFEDIEFDHIRPDAKHNWLGQVDEENDWN
EFLPVADKDTKQAKGLGQERAIFKLYSLGVVTNRDEWVYSRAEDELADKVRYFIGRYNEIIKLPLGDLMSRNWEGDIKMT
RATIADAQSRKSYSLEKNSIVPSLYRPFDVLKMYFSKNLNEMQYQMPSIFPKGVGENVVIALSGSPAAKPFQVLATDILP
SLDLLEKTQCLPFYRYTMNGERLNNITDYALKAFQTHYADTSISREDIFHYVYAVLHHPAYREKYALNLRQEFPRIPFYP
EFGRWAAWGRELMALHIGFESVAPYPLKRTDEPPKNDTPEALALAKKARLKVQRDAAKQPTGAVELDGLTTLAGIPAAAW
AYKLGNRSALEWVLERHKETTPKDATIREKFNTYRFADHKERVIDLLARVTTVSVETVRIVGEMPAETM
A0A345IJ72
2.1.1.72
DNA (28-MER)
synthetic construct
0.008748646
4
(DC)(DA)(DG)(DC)(DC)(DC)(DA)(DT)(DG)(DG)(DA)(DC)(DC)(DC)(DA)(DG)(DA)(DA)(DC)(DC)
(DA)(DC)(DC)(DC)(DA)(DC)(DC)(DC)(DG)
DNA
DNA (27-MER)
synthetic construct
0.009085788000000001
4
(DG)(DG)(DG)(DT)(DG)(DG)(DG)(DT)(DG)(DG)(DT)(DT)(DC)(DT)(DG)(DG)(DG)(DT)(DC)(DC)
(DA)(DT)(DG)(DG)(DG)(DC)(DT)(DG)(DC)
DNA
S-ADENOSYLMETHIONINE
0.000398437
4
SAM
CALCIUM ION
4.0078e-05
4
CA
singleParticle
particle
0.4
8.0
20 mM TrismaHCl ph 8.0/150 NaCl/2CaCl2
Quantifoil
COPPER
200
CARBON
GLOW DISCHARGE
AIR
ETHANE
95
298
FEI VITROBOT MARK IV
FEI TITAN KRIOS
SPOT SCAN
BRIGHT FIELD
FIELD EMISSION GUN
300
100.0
2.7
1.2
0.8
2.5
0.5
FEI TITAN KRIOS AUTOGRID HOLDER
NITROGEN
70.0
70.0
Cs corrector with two hexapod elements
CEOS manufactured Cc corrector
GIF Quantum LS
20
GATAN K3 (6k x 4k)
1
4300
2.0
30.0
1
4
C1
FOURIER SPACE
2.86
FSC 0.143 CUT-OFF
cryoSPARC
V3.1.0
94920
RANDOM ASSIGNMENT
cryoSPARC
V3.1.0
RANDOM ASSIGNMENT
cryoSPARC
v3.1.0
100
cryoSPARC
v3.1.0