REL PDBe PDBe PDBe 2013-03-25 2013-04-24 2013-06-26 2013-07-17 Variable internal flexibility characterizes the helical capsid formed by Agrobacterium VirE2 protein on single-stranded DNA. Bharat TAM Zbaida D Eisenstein M Frankenstein Z Mehlman T Weiner L Sorzano COS Barak Y Albeck S Briggs JAG Wolf SG Elbaum M tcomplex, agrobacterium, helical reconstruction Bharat TA Zbaida D Eisenstein M Frankenstein Z Mehlman T Weiner L Sorzano CO Barak Y Albeck S Briggs JA Wolf SG Elbaum M Variable internal flexibility characterizes the helical capsid formed by agrobacterium VirE2 protein on single-stranded DNA. STRUCTURE 21 1158 1167 2013 23769668 doi:10.1016/j.str.2013.04.027 4blf FULLOVERLAP Agrobacterium T-complex Agrobacterium T-complex Helical 2 VirE2 Agrobacterium fabrum str. C58 Helical true Escherichia coli BL21(DE3) short oligomeric 26mer DNA Agrobacterium fabrum str. C58 DNA SINGLE STRANDED false helical helicalArray 1 8.0
50 mM Tris, 500 mM NaCl
Quantifoil holey carbon
 ETHANE 95 HOMEMADE PLUNGER
Protein was mixed with single-stranded DNA
 FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 1.0 3.2 50000.0 GATAN LIQUID NITROGEN Objective lens astigmatism was corrected at high-magnification (>100,000) 2008-06-06 GENERIC TVIPS 20
Image data was collected as focal pairs.
Particles were picked and preselected using routines of Xmipp, and then reconstruction was carried out using IHRSR.
14.67 110.09 20.0 FSC 0.5 CUT-OFF Bsoft, EMAN, Xmipp, Spider, IHRSR
Phase-flipping
 emd_2339.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 64 64 64 0 0 0 64 64 64 276.48 276.48 276.48 90.0 90.0 90.0 X Y Z -0.0447155 0.05394139 0.00051121 0.01020005 4.32 4.32 4.32 0.008 AUTHOR CryoEM reconstruction of the Agrobacterium T-complex
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 3BTP A FLEXIBLE FIT fitPDB2EM
The N and C terminal domain were fit separately by exhaustive molecular modeling using the fitPDB2EM program. Only the N-terminal domain could be constrained strongly.
Highest cross-correlation RECIPROCAL
emd_2339.jpg