2024-11-06
REL
RCSB
RCSB
RCSB
2021-01-14
2021-05-12
2021-05-12
2024-11-06
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)
R01NS038631
United States
The composite LBD-TMD structure combined from all hippocampal AMPAR subtypes at 3.25 Angstrom resolution
Yu J
Rao P
Native hippocampal ion channel, MEMBRANE PROTEIN
Yu J
Rao P
Clark S
Mitra J
Ha T
Gouaux E
Hippocampal AMPA receptor assemblies and mechanism of allosteric inhibition.
Nature
UK
594
448
453
2021
33981040
doi:10.1038/s41586-021-03540-0
1476-4687
0006
NATUAS
7lep
FULLOVERLAP
Composite LBD-TMD complex from the combined hippocampal AMPAR subtypes
Composite LBD-TMD complex from the combined hippocampal AMPAR subtypes
0
1
2
3
4
5
Bound with MPQX and JNJ55511118
Mus musculus
Mix of AMPAR subunits (GluA1, GluA3, and GluA4)
Mus musculus
0.043650676
1
LEVO
TAAVTTIAEAPYVMLKKNAAAAEGNAAYEGYCVALAAEIAKHAGAAYAAAIVADGKYGARDAATKAWNGMVGELVYGRAA
AAAAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFS(UNK)
(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)NEFGIFNSLWFSLGAFMQQGCDISPRSLSG
RIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLAAGSTKEFFRRSKIAVAAKMWAYMASAE
PSVFAATTAAGAARVRKAKGKAAALLESTMNEYIEQRKPCDTMKVGGNLDSKGYGAATPKGSALRAPVNLAVLKLAEQGA
LDKLKNKWWYDKGECGAAAAASKAKTSALSLSNVAGVFYILAGGLGLAMAVALIEFCYK
Glutamate receptor 2
Mus musculus
0.047252312
2
LEVO
VVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA
IAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEE
FEDGRETQSSESTNEFGIFNSLWFSLGAFMRQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIES
AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQR
KPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEEGLLDKLKNKWWYDKGECGSGGGDSKEKTSALSLSNVAGV
FYILVGGLGLAMLVALIEFCYKSR
C9K0Z0
Mix of AMPAR subunits (GluA1, GluA3, and GluAX)
Mus musculus
0.043702637
1
LEVO
TAVVTTILEDPYVMAKKNAAAAEGNAAYEGYCVALAAEIAKHAAYAYAAAIVADGKYGARDAATKAWNGMVGELVYGAAD
AAAAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFS(UNK)
(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)NEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGG
VWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLAAGSTKEFFRRSKIAVAAKMWAYMASAEPSVFA
ATTAAGAARVRKAKGKAAALLESTMNEYIEQRKPCDTMKVGGNLDSKGYGAATPKGSALRAPVNLAVLKLAEQGALDKLK
AKWWYDKGECGAAAAASKDKTSALSLSNVAGVFYILAGGLGLAMAVALIEFCYK
Protein cornichon homolog 2
Mus musculus
0.018755151999999997
2
LEVO
AFTFAAFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERICCLLRKLVVPEYSIHGLFCLM
FLCAAEWVTLGLNIPLLFTHLWRYFHRPADGSEVMYDAVSIMNADILNYCQKESWCKLAFYLLSFFYYLYSMVYTLVSF
O35089
Voltage-dependent calcium channel gamma-8 subunit
Mus musculus
0.023242705000000002
2
LEVO
VQVLLTTIGAFSAFGLMTIAISTDYWLYTRALICNTTNLTAGDDGPPHRGGSGSSEKKDPGGLTHSGLWRICCLEGLKRG
VCVKINHFPEDTDYDHDSAEYLLRVVRASSIFPILSAILLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGVIV
YISANAGEPGPKRDEEKKNHYSYGWSFYFGGLSFILAEVIGVLAVNIYIERSREA
Q8VHW2
{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid
0.000409254
4
ZK1
(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate
0.0007600759999999999
30
POV
TETRADECANE
0.000198388
1
C14
DECANE
0.000142282
1
D10
6-[2-chloro-6-(trifluoromethoxy)phenyl]-1H-benzimidazol-2-ol
0.00032867399999999994
2
XVD
N-OCTANE
0.000114229
2
OCT
DODECANE
0.000170335
2
D12
singleParticle
particle
8.0
ETHANE
FEI VITROBOT MARK IV
FEI TITAN KRIOS
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
300
GATAN K3 BIOQUANTUM (6k x 4k)
50.0
1
The LBD-TMD GluA1/GluA2 hippocampal AMPAR complex
We used the LBD-TMD GluA1/GluA2 model as the initial template.
3.25
FSC 0.143 CUT-OFF
116710
NOT APPLICABLE
NOT APPLICABLE