<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2316" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2013-02-13</deposition>
         <header_release>2013-02-27</header_release>
         <map_release>2014-02-26</map_release>
         <update>2014-02-26</update>
      </key_dates>
      <title>Structural Basis of Signal Sequence Surveillance and Selection by the SRP-SR Complex</title>
      <authors_list>
         <author>von Loeffelholz O</author>
         <author>Knoops K</author>
         <author>Ariosa A</author>
         <author>Zhang X</author>
         <author>Karuppasamy M</author>
         <author>Huard K</author>
         <author>Schoehn G</author>
         <author>Berger I</author>
         <author>Shan SO</author>
         <author>Schaffitzel C</author>
      </authors_list>
      <keywords>Ribosome, SRP, signal recognition particle, SR, FtsY, cryo-EM</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">von Loeffelholz O</author>
               <author order="2">Knoops K</author>
               <author order="3">Ariosa A</author>
               <author order="4">Zhang X</author>
               <author order="5">Karuppasamy M</author>
               <author order="6">Huard K</author>
               <author order="7">Schoehn G</author>
               <author order="8">Berger I</author>
               <author order="9">Shan SO</author>
               <author order="10">Schaffitzel C</author>
               <title>Structural Basis of Signal Sequence Surveillance and Selection by the SRP-SR Complex</title>
               <journal>NAT.STRUCT.MOL.BIOL.</journal>
               <volume>20</volume>
               <first_page>604</first_page>
               <last_page>610</last_page>
               <year>2013</year>
               <external_references type="PUBMED">23563142</external_references>
               <external_references type="DOI">doi:10.1038/nsmb.2546</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>3zn8</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>Ribosome-SRP-FtsY complex with EspP nascent chain</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Ribosome-SRP-FtsY complex with EspP nascent chain</name>
            <details>monodisperse</details>
            <oligomeric_state>monomer</oligomeric_state>
            <number_unique_components>6</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">2.65</experimental>
               <theoretical units="MDa">2.65</theoretical>
            </molecular_weight>
         </sample_supramolecule>
         <complex_supramolecule supramolecule_id="1">
            <name>70S ribosome</name>
            <details>EspP nascent chain construct translating ribosome</details>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
               <cellular_location>cytosol</cellular_location>
            </natural_source>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <molecular_weight>
               <experimental units="MDa">2.5</experimental>
               <theoretical units="MDa">2.5</theoretical>
            </molecular_weight>
            <ribosome-details>ribosome-prokaryote: ALL</ribosome-details>
         </complex_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>SIGNAL RECOGNITION PARTICLE PROTEIN</name>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="511693">Escherichia coli BL21</recombinant_organism>
               <recombinant_strain>star</recombinant_strain>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name>SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY</name>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.145</experimental>
               <theoretical units="MDa">0.145</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="511693">Escherichia coli BL21</recombinant_organism>
               <recombinant_strain>star</recombinant_strain>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="3">
            <name>4.5 S RNA</name>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="511693">Escherichia coli BL21</recombinant_organism>
               <recombinant_strain>star</recombinant_strain>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="4">
            <name>SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN</name>
            <natural_source database="NCBI">
               <organism ncbi="2287">Sulfolobus solfataricus</organism>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="511693">Escherichia coli BL21</recombinant_organism>
               <recombinant_strain>star</recombinant_strain>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="5">
            <name>DIPEPTIDYL AMINOPEPTIDASE B</name>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="511693">Escherichia coli BL21</recombinant_organism>
               <recombinant_strain>star</recombinant_strain>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>7.5</ph>
                  <details>50 mM Hepes-KOH, 100 mM KOAc, 8 mM Mg(OAc)2, pH 7.5</details>
               </buffer>
               <vitrification>
                  <cryogen_name>NITROGEN</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <chamber_temperature units="K">77</chamber_temperature>
                  <instrument>FEI VITROBOT MARK IV</instrument>
                  <method>grids were glow discharged on both sides for 30 s, blottime 1s, blotforce 1</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI POLARA 300</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2.3</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.7</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">5.0</nominal_defocus_max>
               <nominal_magnification>76000.0</nominal_magnification>
               <calibrated_magnification>76000.0</calibrated_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <temperature>
                  <temperature_min units="K">77</temperature_min>
                  <temperature_max units="K">80</temperature_max>
                  <temperature_average units="K">78</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>correction based on power spectrum from images taken at 100000 x magnification</astigmatism>
                  </legacy>
               </alignment_procedure>
               <details>low dose</details>
               <date>2011-01-11</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GENERIC GATAN (4k x 4k)</film_or_detector_model>
                     <digitization_details>
                        <sampling_interval units="&#181;m">15</sampling_interval>
                     </digitization_details>
                     <number_real_images>1974</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">15</average_electron_dose_per_image>
                     <detector_distance>61.44</detector_distance>
                     <details>Images recorded on CCD camera</details>
                     <bits_per_pixel>32.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Nitrogen cooled, Polara multi-specimen holder</specimen_holder>
               <tilt_angle_min>0</tilt_angle_min>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>semi automatic particle picking from phase flipped images</details>
            <ctf_correction>
               <details>phase flipping</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">12.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>Spider</name>
                  </software>
               </software_list>
               <number_images_used>46945</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
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      <file>emd_2316.map.gz</file>
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            <source>EMDB</source>
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      <details>::::EMDATABANK.org::::EMD-2316::::</details>
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