<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2300" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2013-01-25</deposition>
         <header_release>2013-02-13</header_release>
         <map_release>2013-02-13</map_release>
         <update>2013-04-03</update>
      </key_dates>
      <title>Negative stain EM structure of the PTC3 holotoxin complex (TcdA1, TcdB2, TccC3) in pore state</title>
      <authors_list>
         <author>Gatsogiannis C</author>
         <author>Lang A E</author>
         <author>Meusch D</author>
         <author>Pfaumann V</author>
         <author>Hofnagel O</author>
         <author>Benz R</author>
         <author>Aktories K</author>
         <author>Raunser S</author>
      </authors_list>
      <keywords>Photorabdus, translocation, pore formation, bacterial toxin, ABC toxin, helical toxin</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Gatsogiannis C</author>
               <author order="2">Lang AE</author>
               <author order="3">Meusch D</author>
               <author order="4">Pfaumann V</author>
               <author order="5">Hofnagel O</author>
               <author order="6">Benz R</author>
               <author order="7">Aktories K</author>
               <author order="8">Raunser S</author>
               <title>A syringe-like injection mechanism in Photorhabdus luminescens toxins.</title>
               <journal>NATURE</journal>
               <volume>495</volume>
               <first_page>520</first_page>
               <last_page>523</last_page>
               <year>2013</year>
               <external_references type="PUBMED">23515159</external_references>
               <external_references type="DOI">doi:10.1038/nature11987</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>PTC3 (TcdA1, TcdB2, TccC3)</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>PTC3 (TcdA1, TcdB2, TccC3)</name>
            <oligomeric_state>TcdB2/TccC3 bind to one homopentamer of TcdA1</oligomeric_state>
            <number_unique_components>3</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">1.68</experimental>
               <theoretical units="MDa">1.68</theoretical>
               <method>1.68</method>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="Toxin A">TcdA1</name>
            <natural_source database="NCBI">
               <organism ncbi="29488">Photorhabdus luminescens</organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.283</experimental>
               <theoretical units="MDa">0.283</theoretical>
            </molecular_weight>
            <number_of_copies>5</number_of_copies>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="469008">Escherichia coli BL21(DE3)</recombinant_organism>
               <recombinant_strain>CodonPlus</recombinant_strain>
               <recombinant_plasmid>pCR-BluntII-TOPO, subcloned into pET-28a(+)</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">Q9RN43</external_references>
            </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name>TcdB2</name>
            <natural_source database="NCBI">
               <organism ncbi="29488">Photorhabdus luminescens</organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.166</experimental>
               <theoretical units="MDa">0.166</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">Q7N7Y2</external_references>
            </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="3">
            <name>TccC3</name>
            <natural_source database="NCBI">
               <organism ncbi="29488">Photorhabdus luminescens</organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.109</experimental>
               <theoretical units="MDa">0.109</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">Q7N7Y4</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>11.0</ph>
                  <details>50 mM CAPS, 100 mM NaCl, 0.05% Tween-20, 5% glycerol</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>Grids with adsorbed Protein floated on 0.07% Uranyl Formate for 45 sec.</details>
               </staining>
               <grid>
                  <details>glow discharged 400 mesh copper grids with thin carbon support</details>
               </grid>
               <vitrification>
                  <cryogen_name>NONE</cryogen_name>
                  <instrument>OTHER</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>JEOL 1400</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>LAB6</electron_source>
               <acceleration_voltage units="kV">120</acceleration_voltage>
               <nominal_cs units="mm">3.4</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.0012</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">0.002</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <calibrated_magnification>67210.0</calibrated_magnification>
               <specimen_holder_model>JEOL</specimen_holder_model>
               <date>2012-01-17</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">TVIPS TEMCAM-F416 (4k x 4k)</film_or_detector_model>
                     <number_real_images>104</number_real_images>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C5</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">40.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>Sparx</name>
                  </software>
               </software_list>
               <number_images_used>317</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
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      <file>emd_2300.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>112</col>
         <row>112</row>
         <sec>112</sec>
      </dimensions>
      <origin>
         <col>-56</col>
         <row>-56</row>
         <sec>-56</sec>
      </origin>
      <spacing>
         <x>112</x>
         <y>112</y>
         <z>112</z>
      </spacing>
      <cell>
         <a units="&#8491;">519.68</a>
         <b units="&#8491;">519.68</b>
         <c units="&#8491;">519.68</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.03637839</minimum>
         <maximum>0.07252365</maximum>
         <average>0.00077122</average>
         <std>0.00517941</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">4.64</x>
         <y units="&#8491;">4.64</y>
         <z units="&#8491;">4.64</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.008</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of PTC3 holotoxin complex in pore state</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2300::::</details>
   </map>
</emd>