2021-09-22 REL RCSB RCSB RCSB 2020-11-14 2021-09-22 2021-09-22 2021-09-22 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) P50AI150476 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) S10OD020054 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) S10OD021741 United States Spike protein trimer Asarnow D Faust B Bohn M Bulkley D Manglik A Craik CS Cheng Y Asarnow D Wang B Lee WH Hu Y Huang CW Faust B Ng PML Ngoh EZX Bohn M Bulkley D Pizzorno A Ary B Tan HC Lee CY Minhat RA Terrier O Soh MK Teo FJ Yeap YYC Seah SGK Chan CEZ Connelly E Young NJ Maurer-Stroh S Renia L Hanson BJ Rosa-Calatrava M Manglik A Cheng Y Craik CS Wang CI Structural insight into SARS-CoV-2 neutralizing antibodies and modulation of syncytia. Cell 184 3192 3204.e16 2021 doi:10.1016/j.cell.2021.04.033 1097-4172 Goddard TD Huang CC Meng EC Pettersen EF Couch GS Morris JH Ferrin TE UCSF ChimeraX: Meeting Modern Challenges in Visualization and Analysis Protein Sci. US 27 14 25 2018 28710774 doi:10.1002/pro.3235 0961-8368 0795 PRCIEI EMD-22994 other EM volume EMD-22993 other EM volume EMD-22995 associated EM volume EMD-22997 other EM volume SARS-CoV-2 Spike protein trimer SARS-CoV-2 Spike protein trimer 0 1 Severe acute respiratory syndrome coronavirus 2 Cricetulus griseus expiCHO Ovary 0.4571 Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 Cricetulus griseus LEVO MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQ singleParticle particle 0.4 8.0 10.0 HEPES 200.0 NaCl sodium chloride Quantifoil R1.2/1.3 GOLD 300 CARBON HOLEY GLOW DISCHARGE AIR ETHANE 100 4 FEI VITROBOT MARK IV
8-10 seconds, blot force 0.
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 0.5 1.5 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 20 GATAN K3 BIOQUANTUM (6k x 4k) 5760 4092 5.0 1 7536 5.9 67.7
Movies were collected at super-resolution using correlated double sampling, with a frame time of 0.05 seconds and dose rate 8 e-/px/s
 1 cryoSPARC 2.15.0
Ab initio model from cryoSPARC
 1 C3 FOURIER SPACE 2.51 FSC 0.143 CUT-OFF cryoSPARC 2.15.0 76424 MAXIMUM LIKELIHOOD cryoSPARC 2.15.0 MAXIMUM LIKELIHOOD cryoSPARC 2.15.0 4 cryoSPARC 2.15.0 emd_22995.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 267.19998 267.19998 267.19998 90.0 90.0 90.0 X Y Z -0.21315697 1.2526035 0.012062265 0.061621334 0.8349999 0.8349999 0.8349999 0.5 AUTHOR Spike protein trimer in the closed conformation, raw map from non-uniform refinement in cryoSPARC v2.15 FLEXIBLE FIT REAL emd_22995_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 267.19998 267.19998 267.19998 90.0 90.0 90.0 X Y Z -0.21934062 1.2401116 0.011584603 0.062066685 0.8349999 0.8349999 0.8349999 AUTHOR Spike protein trimer with one RBD open, raw map from non-uniform refinement in cryoSPARC v2.15 emd_22995_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 267.19998 267.19998 267.19998 90.0 90.0 90.0 X Y Z -0.9750604 1.5222723 0.0072455965 0.13703293 0.8349999 0.8349999 0.8349999 AUTHOR Spike protein trimer with one RBD open, half-map A from non-uniform refinement in cryoSPARC v2.15 emd_22995_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 267.19998 267.19998 267.19998 90.0 90.0 90.0 X Y Z -0.99349034 1.5109907 0.0072235838 0.13721664 0.8349999 0.8349999 0.8349999 AUTHOR Spike protein trimer with one RBD open, half-map B from non-uniform refinement in cryoSPARC v2.15 emd_22995_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 267.19998 267.19998 267.19998 90.0 90.0 90.0 X Y Z -0.40010324 1.3009579 0.006756887 0.07980982 0.8349999 0.8349999 0.8349999 AUTHOR Spike protein trimer in the closed conformation, half-map A from non-uniform refinement in cryoSPARC v2.15 emd_22995_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 267.19998 267.19998 267.19998 90.0 90.0 90.0 X Y Z -0.41703418 1.3150512 0.0067638676 0.07986435 0.8349999 0.8349999 0.8349999 AUTHOR Spike protein trimer in the closed conformation, half-map B from non-uniform refinement in cryoSPARC v2.15