<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_2_0/emdb.xsd" emdb_id="EMD-22904" version="3.0.2.0">
    <admin>
        <current_status>
            <date>2020-12-09</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2020-10-27</deposition>
            <header_release>2020-12-09</header_release>
            <map_release>2020-12-09</map_release>
            <update>2020-12-09</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Health and Medical Research Council (NHMRC, Australia)</funding_body>
                <code>1126357</code>
                <country>Australia</country>
            </grant_reference>
        </grant_support>
        <title>Low resolution map of the nucleosome deacetylase complex from murine erythroleukemia cells.</title>
        <authors_list>
            <author>Jackman MJ</author>
            <author>Landsberg MJ</author>
            <author>Mackay JP</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Low JKK</author>
                    <author order="2">Silva APG</author>
                    <author order="3">Sharifi Tabar M</author>
                    <author order="4">Torrado M</author>
                    <author order="5">Webb SR</author>
                    <author order="6">Parker BL</author>
                    <author order="7">Sana M</author>
                    <author order="8">Smits C</author>
                    <author order="9">Schmidberger JW</author>
                    <author order="10">Brillault L</author>
                    <author order="11">Jackman MJ</author>
                    <author order="12">Williams Jr DC</author>
                    <author order="13">Blobel GA</author>
                    <author order="14">Hake SB</author>
                    <author order="15">Shepherd NE</author>
                    <author order="16">Landsberg MJ</author>
                    <author order="17">Mackay JP</author>
                    <title>The Nucleosome Remodeling and Deacetylase Complex Has an Asymmetric, Dynamic, and Modular Architecture.</title>
                    <journal_abbreviation>Cell Rep</journal_abbreviation>
                    <country>US</country>
                    <volume>33</volume>
                    <first_page>108450</first_page>
                    <last_page>108450</last_page>
                    <year>2020</year>
                    <external_references type="PUBMED">33264611</external_references>
                    <external_references type="DOI">doi:10.1016/j.celrep.2020.108450</external_references>
                    <external_references type="ISSN">2211-1247</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-22895</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>A complex within the same family, only differing by the presence of CHD4.</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-22904</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>The nucleosome deacetylase complex</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>The nucleosome deacetylase complex</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="10090">Mus musculus</organism>
                    <organ>Spleen</organ>
                    <cellular_location>nucleus</cellular_location>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>cell</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.2</ph>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>uranyl acetate</material>
                    </staining>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <details></details>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI F30</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>OTHER</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">100.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">20.0</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>14019</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>RANDOM ASSIGNMENT</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="67109">
        <file>emd_22904.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>256</col>
            <row>256</row>
            <sec>256</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>256</x>
            <y>256</y>
            <z>256</z>
        </spacing>
        <cell>
            <a units="Å">614.4</a>
            <b units="Å">614.4</b>
            <c units="Å">614.4</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-1.0947253</minimum>
            <maximum>3.1702197</maximum>
            <average>-0.023727752</average>
            <std>0.1383911</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">2.4</x>
            <y units="Å">2.4</y>
            <z units="Å">2.4</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.294</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-22904::::</label>
        <annotation_details>Map of NuDe obtained from negative-stained electron microscopy, using the software package CryoSPARC.</annotation_details>
    </map>
</emd>
