2024-03-06 REL RCSB RCSB RCSB 2020-10-20 2020-11-11 2020-11-11 2024-03-06 Welch Foundation F-1938 United States Cancer Prevention and Research Institute of Texas (CPRIT) RR160088 United States Cryo-EM Structure of the Desulfovibrio vulgaris Type I-C Apo Cascade O'Brien R Wrapp D Bravo JPK Schwartz E Taylor D CRISPR, Cascade, RNA BINDING PROTEIN-RNA complex O'Brien RE Santos IC Wrapp D Bravo JPK Schwartz EA Brodbelt JS Taylor DW Structural basis for assembly of non-canonical small subunits into type I-C Cascade. Nat Commun UK 11 5931 5931 2020 33230133 doi:10.1038/s41467-020-19785-8 2041-1723 7kha FULLOVERLAP Type I-C Apo Cascade Type I-C Apo Cascade 0 1 2 3 4 5
Minimal CRISPR Cascade
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303) Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303 0.371 CRISPR-associated protein, CT1134 family Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303) Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303 0.025250968999999998 1 Escherichia coli BL21(DE3) LEVO TYGIRLRVWGDYACFTRPEMKVERVSYDVMPPSAARGILEAIHWKPAIRWIVDRIHVLRPIVFDNVRRNEVSSKIPKPNP ATAMRDRKPLYFLVDDGSNRQQRAATLLRNVDYVIEAHFELTDKAGAEDNAGKHLDIFRRRARAGQSFQQPCLGCREFPA SFELLEGDVPLSCYAGEKRDLGYMLLDIDFERDMTPLFFKAVMEDGVITPPSRTSPEVRA Q72WF9 CRISPR-associated protein, TM1801 family Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303) Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303 0.032358912 7 Escherichia coli BL21(DE3) LEVO MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHE RAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVT TKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQ NRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML Q72WF7 CRISPR-associated protein, CT1133 family Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303) Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303 0.059310883 1 Escherichia coli BL21(DE3) LEVO WENTSYILGVDAKGKQERTDKCHAAFIAHIKAYCDTADQDLAAVLQFLEHGEKDLSAFPVSEEVIGSNIVFRIEGEPGFV HERPAARQAWANCLNRREQGLCGQCLITGERQKPIAQLHPSIKGGRDGVRGAQAVASIVSFNNTAFESYGKEQSINAPVS QEAAFSYVTALNYLLNPSNRQKVTIADATVVFWAERSSPAEDIFAGMFDPPSTTAKPESSNGTPPEDSEEGSQPDTARDD PHAAARMHDLLVAIRSGKRATDIMPDMDESVRFHVLGLSPNAARLSVRFWEVDTVGHMLDKVGRHYRELEIIPQFNNEQE FPSLSTLLRQTAVLNKTENISPVLAGGLFRAMLTGGPYPQSLLPAVLGRIRAEHARPEDKSRYRLEVVTYYRAALIKAYL IRNRKLEVPVSLDPARTDRPYLLGRLFAVLEKAQEDAVPGANATIKDRYLASASANPGQVFHMLLKNASNHTAKLRKDPE RKGSAIHYEIMMQEIIDNISDFPVTMSSDEQGLFMIGYYHQRKALFTKKNKEN Q72WF8 CRISPR-associated protein, CT1133 family Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303) Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303 0.014017980999999999 2 Escherichia coli BL21(DE3) LEVO VSLDPARTDRPYLLGRLFAVLEKAQEDAVPGANATIKDRYLASASANPGQVFHMLLKNASNHTAKLRKDPERKGSAIHYE IMMQEIIDNISDFPVTMSSDEQGLFMIGYYHQRKALFTKKNKEN Q72WF8 RNA (45-MER) Desulfovibrio vulgaris str. Hildenborough Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303 0.014457629 1 UGGAUUGAAACGCCAUGCUCAGGCUGGCGAGUGCGCCACUCAUCA singleParticle particle 0.3 7.5 C-flat-2/2 COPPER GRAPHENE OXIDE CONTINUOUS GLOW DISCHARGE AIR ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K3 (6k x 4k) 1 5400 33.0 1 850000 3 3.13 FSC 0.143 CUT-OFF cryoSPARC 156524 NOT APPLICABLE MAXIMUM LIKELIHOOD 18 cryoSPARC emd_22876.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 188 109 88 0 0 0 188 109 88 196.83601 114.12301 92.136 90.0 90.0 90.0 X Y Z -8.471729 14.359439 0.000000000013258 1.0 1.047 1.047 1.047 1.21 AUTHOR emd_22876_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 -122 -162 -172 432 432 432 452.30402 452.30402 452.30402 90.0 90.0 90.0 X Y Z -0.7529213 2.4772382 0.000916067 0.09161128 1.047 1.047 1.047 AUTHOR emd_22876_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 432 432 432 -122 -162 -172 432 432 432 452.30402 452.30402 452.30402 90.0 90.0 90.0 X Y Z -0.7478023 2.3409042 0.0009337576 0.0915651 1.047 1.047 1.047 AUTHOR