2024-03-06 REL RCSB RCSB RCSB 2020-10-09 2020-10-21 2020-10-21 2024-03-06 DARPA HR0011-19-2-0020 United States FastGrants COVID19 grant United States Laboratory for Genomics Research Excellence in Research Award COVID19 United States Quantitative Biosciences Institute United States Human Tom70 in complex with SARS CoV2 Orf9b QCRG Structural Biology Consortium Orf9b, Tom70, mitochondria, virus infection, SARS CoV2, VIRAL PROTEIN Gordon DE Hiatt J Bouhaddou M Rezelj VV Ulferts S Braberg H Jureka AS Obernier K Guo JZ Batra J Kaake RM Weckstein AR Owens TW Gupta M Pourmal S Titus EW Cakir M Soucheray M McGregor M Cakir Z Jang G O'Meara MJ Tummino TA Zhang Z Foussard H Rojc A Zhou Y Kuchenov D Huttenhain R Xu J Eckhardt M Swaney DL Fabius JM Ummadi M Tutuncuoglu B Rathore U Modak M Haas P Haas KM Naing ZZC Pulido EH Shi Y Barrio-Hernandez I Memon D Petsalaki E Dunham A Marrero MC Burke D Koh C Vallet T Silvas JA Azumaya CM Billesbolle C Brilot AF Campbell MG Diallo A Dickinson MS Diwanji D Herrera N Hoppe N Kratochvil HT Liu Y Merz GE Moritz M Nguyen HC Nowotny C Puchades C Rizo AN Schulze-Gahmen U Smith AM Sun M Young ID Zhao J Asarnow D Biel J Bowen A Braxton JR Chen J Chio CM Chio US Deshpande I Doan L Faust B Flores S Jin M Kim K Lam VL Li F Li J Li YL Li Y Liu X Lo M Lopez KE Melo AA Moss 3rd FR Nguyen P Paulino J Pawar KI Peters JK Pospiech Jr TH Safari M Sangwan S Schaefer K Thomas PV Thwin AC Trenker R Tse E Tsui TKM Wang F Whitis N Yu Z Zhang K Zhang Y Zhou F Saltzberg D Hodder AJ Shun-Shion AS Williams DM White KM Rosales R Kehrer T Miorin L Moreno E Patel AH Rihn S Khalid MM Vallejo-Gracia A Fozouni P Simoneau CR Roth TL Wu D Karim MA Ghoussaini M Dunham I Berardi F Weigang S Chazal M Park J Logue J McGrath M Weston S Haupt R Hastie CJ Elliott M Brown F Burness KA Reid E Dorward M Johnson C Wilkinson SG Geyer A Giesel DM Baillie C Raggett S Leech H Toth R Goodman N Keough KC Lind AL Klesh RJ Hemphill KR Carlson-Stevermer J Oki J Holden K Maures T Pollard KS Sali A Agard DA Cheng Y Fraser JS Frost A Jura N Kortemme T Manglik A Southworth DR Stroud RM Alessi DR Davies P Frieman MB Ideker T Abate C Jouvenet N Kochs G Shoichet B Ott M Palmarini M Shokat KM Garcia-Sastre A Rassen JA Grosse R Rosenberg OS Verba KA Basler CF Vignuzzi M Peden AA Beltrao P Krogan NJ Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science US 370 2020 33060197 doi:10.1126/science.abe9403 1095-9203 0038 SCIEAS 7kdt FULLOVERLAP Orf9b-Tom70 complex Orf9b-Tom70 complex 0 1 2 Homo sapiens Mitochondrial import receptor subunit TOM70 Homo sapiens 0.056875726999999994 1 Escherichia coli BL21(DE3) LEVO NSLDRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNVDLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVK ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNREPLMPSPQFIKSYFSSFTDDI ISQPMLKGEKSDEDKDKEGEALEVKENSGYLKAKQYMEEENYDKIISECSKEIDAEGKYMAEALLLRATFYLLIGNANAA KPDLDKVISLKEANVKLRANALIKRGSMYMQQQQPLLSTQDFNMAADIDPQNADVYHHRGQLKILLDQVEEAVADFDECI RLRPESALAQAQKCFALYRQAYTGNNSSQIQAAMKGFEEVIKKFPRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPD NATTYVHKGLLQLQWKQDLDRGLELISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLC DAAHAQTEVAKKYGLKPPTL O94826 ORF9b protein Severe acute respiratory syndrome coronavirus 2 0.010808636 1 Escherichia coli BL21(DE3) LEVO MDPKISEMHPALRLVDPQIQLAVTRMENAVGRDQNNVGPKVYPIILRLGSPLSLNMARKTLNSLEDKAFQLTPIAVQMTK LATTEELPDEFVVVTVK P0DTD2 singleParticle particle 12.5 7.5 150.0 KCl 20.0 HEPES-NaOH 0.5 THP Quantifoil R1.2/1.3 GOLD 400 CARBON HOLEY GLOW DISCHARGE ETHANE 100 277.15 FEI VITROBOT MARK IV
Blot for 5 seconds before plunging into liquid ethane.
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) 1534 66.0 1 2805121
Template picked based on previous low resolution reconstruction (which was picked with a blob picker)
Ab initio reconstruction in cryoSPARC
 1 FOURIER SPACE 3.05 FSC 0.143 CUT-OFF cryoSPARC v2.15.0 178373 RANDOM ASSIGNMENT MAXIMUM LIKELIHOOD cryoSPARC v2.15.0 emd_22829.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 213.504 213.504 213.504 90.0 90.0 90.0 X Y Z -2.7296653 4.001267 -0.0003437746 0.105128154 0.834 0.834 0.834 0.5 AUTHOR 3FP3 PDB experimental model emd_22829_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 213.504 213.504 213.504 90.0 90.0 90.0 X Y Z -0.6896528 1.3453149 0.0007894581 0.08448438 0.834 0.834 0.834 AUTHOR emd_22829_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 213.504 213.504 213.504 90.0 90.0 90.0 X Y Z -0.67135185 1.3449091 0.00079237425 0.08419839 0.834 0.834 0.834 AUTHOR