<emd emdb_id="EMD-2274" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2013-01-07</deposition>
            <header_release>2013-02-06</header_release>
            <map_release>2014-01-22</map_release>
            <update>2014-04-02</update>
        </key_dates>
        <title>human crm1 extended conformation</title>
        <authors_list>
            <author>Doelker N</author>
            <author>Blanchet CE</author>
            <author>Haselbach D</author>
            <author>Voss B</author>
            <author>Kappel C</author>
            <author>Monecke T</author>
            <author>Svergun D</author>
            <author>Stark H</author>
            <author>Ficner R</author>
            <author>Zacharias U</author>
            <author>Grubmueller H</author>
            <author>Dickmanns A</author>
        </authors_list>
        <keywords>Xpo-1, crm1, human</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Doelker N</author>
                    <author order="2">Blanchet CE</author>
                    <author order="3">Voss B</author>
                    <author order="4">Haselbach D</author>
                    <author order="5">Kappel C</author>
                    <author order="6">Monecke T</author>
                    <author order="7">Svergun DI</author>
                    <author order="8">Stark H</author>
                    <author order="9">Ficner R</author>
                    <author order="10">Zachariae U</author>
                    <author order="11">Grubmueller H</author>
                    <author order="12">Dickmanns A</author>
                    <title>Structural Determinants and Mechanism of Mammalian CRM1 Allostery</title>
                    <journal>STRUCTURE</journal>
                    <volume>21</volume>
                    <first_page>1350</first_page>
                    <last_page>1360</last_page>
                    <year>2013</year>
                    <external_references type="PUBMED">23850451</external_references>
                    <external_references type="DOI">doi:10.1016/j.str.2013.05.015</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>extended conformation of human crm1</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>extended conformation of human crm1</name>
                <details>The sample was monodisperse</details>
                <oligomeric_state>monomer</oligomeric_state>
                <number_unique_components>1</number_unique_components>
                <molecular_weight>
                    <theoretical units="MDa">0.11</theoretical>
                </molecular_weight>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="crm1">xpo-1</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                    <synonym_organism>Human</synonym_organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.11</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <oligomeric_state>Monomer</oligomeric_state>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <sequence />
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.2</concentration>
                    <buffer>
                        <ph>7.5</ph>
                        <details>50mM NaCl, 50 mM HEPES/NaOH pH 7.5, 2 mM MgOAc and 2 mM DTT</details>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <details>Grids with adsorbed protein floated on 2% w/v uranyl acetate for 20 seconds.</details>
                    </staining>
                    <grid>
                        <details>200 mesh cupper grid with thin and thick carbon support</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>NONE</cryogen_name>
                        <instrument>OTHER</instrument>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI/PHILIPS CM200FEG</microscope>
                    <illumination_mode>SPOT SCAN</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">160</acceleration_voltage>
                    <nominal_magnification>122000.0</nominal_magnification>
                    <specimen_holder_model>SIDE ENTRY, EUCENTRIC</specimen_holder_model>
                    <date>2012-09-28</date>
                    <image_recording_list>
                        <image_recording>
                            <number_real_images>250</number_real_images>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <ctf_correction>
                    <details>each particle</details>
                </ctf_correction>
                <final_reconstruction>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">20.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>imagic</name>
                        </software>
                    </software_list>
                    <number_images_used>19254</number_images_used>
                </final_reconstruction>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="617">
        <file>emd_2274.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>54</col>
            <row>54</row>
            <sec>54</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>54</x>
            <y>54</y>
            <z>54</z>
        </spacing>
        <cell>
            <a units="&#8491;">199.8</a>
            <b units="&#8491;">199.8</b>
            <c units="&#8491;">199.8</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.46201536</minimum>
            <maximum>2.49788308</maximum>
            <average>0.00172024</average>
            <std>0.13157493</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">3.7</x>
            <y units="&#8491;">3.7</y>
            <z units="&#8491;">3.7</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.28</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>extended conformation of human crm1</annotation_details>
        <details>::::EMDATABANK.org::::EMD-2274::::</details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <initial_model>
                    <access_code>4FGV</access_code>
                </initial_model>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <software_list>
                    <software>
                        <name>Chimera</name>
                    </software>
                </software_list>
                <details>Protocol: Rigid body</details>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>