2024-12-25 REL RCSB RCSB RCSB 2020-09-07 2021-01-20 2021-01-20 2024-12-25 National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI) HL112808 United States Howard Hughes Medical Institute (HHMI) United States Cardiac Sodium channel with toxin bound Jiang D Catterall WA Ion channel, Toxin bound, MEMBRANE PROTEIN Jiang D Tonggu L Gamal El-Din TM Banh R Pomes R Zheng N Catterall WA Structural basis for voltage-sensor trapping of the cardiac sodium channel by a deathstalker scorpion toxin. Nat Commun UK 12 128 128 2021 33397917 doi:10.1038/s41467-020-20078-3 2041-1723 7k18 FULLOVERLAP Cryo-EM map for sodium channel and scorpion toxin complex Cryo-EM map for sodium channel and scorpion toxin complex 0 1 2 0.25 Sodium channel protein type 5 subunit alpha 1 1 Rattus norvegicus Alpha-like toxin Lqh3 1 2 Leiurus hebraeus Sodium channel protein type 5 subunit alpha, Enhanced Green fluorescent protein Aequorea victoria 0.20903778099999998
Loops truncated sodium channel with EGFP and FLAG tag fused at the C-terminus
1 Homo sapiens LEVO MANLLLPRGTSSFRRFTRESLAAIEKRMAEKQARGGSATSQESREGLQEEEAPRPQLDLQASKKLPDLYGNPPRELIGEP LEDLDPFYSTQKTFIVLNKGKTIFRFSATNALYVLSPFHPVRRAAVKILVHSLFSMLIMCTILTNCVFMAQHDPPPWTKY VEYTFTAIYTFESLVKILARGFCLHAFTFLRDPWNWLDFSVIVMAYTTEFVDLGNVSALRTFRVLRALKTISVISGLKTI VGALIQSVKKLADVMVLTVFCLSVFALIGLQLFMGNLRHKCVRNFTELNGTNGSVEADGLVWNSLDVYLNDPANYLLKNG TTDVLLCGNSSDAGTCPEGYRCLKAGENPDHGYTSFDSFAWAFLALFRLMTQDCWERLYQQTLRSAGKIYMIFFMLVIFL GSFYLVNLILAVVAMAYEEQNQATIAETEEKEKRFQEAMEMLKKEHEALTIRGVDTVSRSSARQRALSAVSVLTSALEEL EESHRKCPPCWNRFAQHYLIWECCPLWMSIKQKVKFVVMDPFADLTITMCIVLNTLFMALEHYNMTAEFEEMLQVGNLVF TGIFTAEMTFKIIALDPYYYFQQGWNIFDSIIVILSLMELGLSRMGNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSV GALGNLTLVLAIIVFIFAVVGMQLFGKNYSELRHRISDSGLLPRWHMMDFFHAFLIIFRILCGEWIETMWDCMEVSGQSL CLLVFLLVMVIGNLVVLNLFLALLLSSFSADNLTAPDEDGEMNNLQLALARIQRGLRFVKRTTWDFCCGILRRRPKKPAA LATHSQLPSCITAPRSPPPPEVEKVPPARKETRFEEDKRPGQGTPGDSEPVCVPIAVAESDTEDQEEDEENGKVWWRLRK TCYRIVEHSWFETFIIFMILLSSGALAFEDIYLEERKTIKVLLEYADKMFTYVFVLEMLLKWVAYGFKKYFTNAWCWLDF LIVDVSLVSLVANTLGFAEMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLF AGKFGRCINQTEGDLPLNYTIVNNKSECESFNVTGELYWTKVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRGYEE QPQWEDNLYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNK YQGFIFDIVTKQAFDVTIMFLICLNMVTMMVETDDQSPEKVNILAKINLLFVAIFTGECIVKMAALRHYYFTNSWNIFDF VVVILSIVGTVLSDIIQKYFFSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGM ANFAYVKWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPPYCDPNLPNSNGSRGNCGSPAVGILFFTTYI IISFLIVVNMYIAIILENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYLALSDFADALSEPLRIAKPNQISLI NMDLPMVSGDRIHCMDILFAFTKRVLGESGEMDALKIQMEEKFMAANPSKISYEPITTTLEVLFQGPGSMVSKGEELFTG VVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPE GYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHN IEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITLGMDELYKGSDYKDDDDK P15389 P42212 Alpha-like toxin Lqh3 Leiurus hebraeus 0.007065984 1 LEVO VRDGYIAQPENCVYHCFPGSSGCDTLCKEKGGTSGHCGFKVGHGLACWCNALPDNVGIIVEGEKCHS P56678 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 1 NAG [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate 0.0007179959999999999 11 6OU singleParticle particle 4.5 6.0 150.0 NaCl sodium chloride 0.006 GDN101 glyco-diosgenin 25.0 Imidazole UltrAuFoil GOLD 300 GLOW DISCHARGE ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 1.0 2.5 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 60.0 1 3.3 FSC 0.143 CUT-OFF 267595 RANDOM ASSIGNMENT RELION MAXIMUM LIKELIHOOD RELION 3 RELION emd_22621.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 270.336 270.336 270.336 90.0 90.0 90.0 X Y Z -0.08389278 0.14828731 -0.00003622136 0.003499711 1.056 1.056 1.056 0.015 AUTHOR cryo-EM map of sodium channel with toxin RIGID BODY FIT REAL 59.0