2025-05-14 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name COORDINATE_REPLACEMENT AUTHOR Model orientation/position STRUCTURE_SUMMARY atom_site entity entity_name_com entity_poly entity_poly_seq entity_src_gen entity_src_nat pdbx_entity_instance_feature pdbx_entry_details pdbx_nonpoly_scheme pdbx_poly_seq_scheme pdbx_struct_conn_angle pdbx_struct_sheet_hbond pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues pdbx_validate_close_contact pdbx_validate_rmsd_angle pdbx_validate_torsion refine_ls_restr struct_conf struct_conn struct_ref struct_ref_seq struct_ref_seq_dif struct_sheet struct_sheet_order struct_sheet_range _entity.formula_weight _entity.pdbx_description _entity.pdbx_ec _entity.pdbx_mutation _entity.src_method _entity_name_com.name _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly_seq.entity_id _entity_poly_seq.mon_id _entity_poly_seq.num _entity_src_gen.entity_id _entity_src_nat.entity_id _pdbx_entry_details.has_ligand_of_interest _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.seq_id _refine_ls_restr.dev_ideal _refine_ls_restr.number _struct_ref.db_code _struct_ref.db_name _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_seq_one_letter_code _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end _struct_ref_seq.pdbx_db_accession _struct_ref_seq.pdbx_strand_id _struct_ref_seq.ref_id _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end _struct_ref_seq_dif.align_id DATABASE_REFERENCES chem_comp_atom chem_comp_bond database_2 _database_2.pdbx_DOI _database_2.pdbx_database_accession STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details _em_admin.last_update _em_software.name _pdbx_entry_details.has_protein_modification RCSB RCSB 2020-08-15 2020-10-21 2020-10-21 2025-05-14 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R35 GM122575 United States National Institutes of Health/National Cancer Institute (NIH/NCI) R01 CA201402 United States National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS) R01 NS092695 United States Gao Y Eskici G G protein, G protein-effector complex, Transducin, phosphodiesterase 6, phototransduction, GPCR signaling, SIGNALING PROTEIN Gao Y Eskici G Ramachandran S Poitevin F Seven AB Panova O Skiniotis G Cerione RA Mol.Cell US 80 237 2020 33007200 doi:10.1016/j.molcel.2020.09.013 1097-2765 2168 MOCEFL 7jsn FULLOVERLAP Complex of Transducin and Phosphodiesterase 6 Complex of Transducin and Phosphodiesterase 6 0 1 2 3 4 0.3 Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha (E.C.3.1.4.35), Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta (E.C.3.1.4.35), Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma (E.C.3.1.4.35) 1 1 2 3 Bos taurus Guanine nucleotide-binding protein G(t) subunit alpha-1, Guanine nucleotide-binding protein G(i) subunit alpha-1 chimera,Gt-alpha/Gi1-alpha chimera 1 4 Bos taurus Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha Bos taurus 0.099461789 1 LEVO MGEVTAEEVEKFLDSNVSFAKQYYNLRYRAKVISDLLGPREAAVDFSNYHALNSVEESEIIFDLLRDFQDNLQAEKCVFN VMKKLCFLLQADRMSLFMYRARNGIAELATRLFNVHKDAVLEECLVAPDSEIVFPLDMGVVGHVALSKKIVNVPNTEEDE HFCDFVDTLTEYQTKNILASPIMNGKDVVAIIMVVNKVDGPHFTENDEEILLKYLNFANLIMKVFHLSYLHNCETRRGQI LLWSGSKVFEELTDIERQFHKALYTVRAFLNCDRYSVGLLDMTKQKEFFDVWPVLMGEAPPYAGPRTPDGREINFYKVID YILHGKEDIKVIPNPPPDHWALVSGLPTYVAQNGLICNIMNAPSEDFFAFQKEPLDESGWMIKNVLSMPIVNKKEEIVGV ATFYNRKDGKPFDEMDETLMESLTQFLGWSVLNPDTYELMNKLENRKDIFQDMVKYHVKCDNEEIQTILKTREVYGKEPW ECEEEELAEILQGELPDADKYEINKFHFSDLPLTELELVKCGIQMYYELKVVDKFHIPQEALVRFMYSLSKGYRRITYHN WRHGFNVGQTMFSLLVTGKLKRYFTDLEALAMVTAAFCHDIDHRGTNNLYQMKSQNPLAKLHGSSILERHHLEFGKTLLR DESLNIFQNLNRRQHEHAIHMMDIAIIATDLALYFKKRTMFQKIVDQSKTYETQQEWTQYMMLDQTRKEIVMAMMMTACD LSAITKPWEVQSKVALLVAAEFWEQGDLERTVLQQNPIPMMDRNKADELPKLQVGFIDFVCTFVYKEFSRFHEEITPMLD GITNNRKEWKALADEYETKMKGLEEEKQKQQAANQAAAGSQHGGKQPGGGPASKSCCVQ P11541 3.1.4.35 Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta Bos taurus 0.098449648 1 LEVO MSLSEGQVHRFLDQNPGFADQYFGRKLSPEDVANACEDGCPEGCTSFRELCQVEESAALFELVQDMQENVNMERVVFKIL RRLCSILHADRCSLFMYRQRNGVAELATRLFSVQPDSVLEDCLVPPDSEIVFPLDIGVVGHVAQTKKMVNVQDVMECPHF SSFADELTDYVTRNILATPIMNGKDVVAVIMAVNKLDGPCFTSEDEDVFLKYLNFGTLNLKIYHLSYLHNCETRRGQVLL WSANKVFEELTDIERQFHKAFYTVRAYLNCDRYSVGLLDMTKEKEFFDVWPVLMGEAQAYSGPRTPDGREILFYKVIDYI LHGKEDIKVIPSPPADHWALASGLPTYVAESGFICNIMNAPADEMFNFQEGPLDDSGWIVKNVLSMPIVNKKEEIVGVAT FYNRKDGKPFDEQDEVLMESLTQFLGWSVLNTDTYDKMNKLENRKDIAQDMVLYHVRCDREEIQLILPTRERLGKEPADC EEDELGKILKEVLPGPAKFDIYEFHFSDLECTELELVKCGIQMYYELGVVRKFQIPQEVLVRFLFSVSKGYRRITYHNWR HGFNVAQTMFTLLMTGKLKSYYTDLEAFAMVTAGLCHDIDHRGTNNLYQMKSQNPLAKLHGSSILERHHLEFGKFLLSEE TLNIYQNLNRRQHEHVIHLMDIAIIATDLALYFKKRTMFQKIVDESKNYEDRKSWVEYLSLETTRKEIVMAMMMTACDLS AITKPWEVQSKVALLVAAEFWEQGDLERTVLDQQPIPMMDRNKAAELPKLQVGFIDFVCTFVYKEFSRFHEEILPMFDRL QNNRKEWKALADEYEAKVKALEEDQKKETTAKKVGTEICNGGPAPRSSTCRIL P23439 3.1.4.35 Guanine nucleotide-binding protein G(t) subunit alpha-1, Guanine nucleotide-binding protein G(i) subunit alpha-1 chimera Bos taurus 0.042218035 2 Escherichia coli LEVO MAHHHHHHAMGAGASAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYG NTLQSILAIVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYY LSDLERLVTPGYVPTEQDVLRSCVKTTGIIETQFSFKDLNFRMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDMVLV EDDEVNRMHESMHLFNSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLSICFPDYAGSNTYEEAGNYIKVQFLELNMRRD VKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGLFAAATETSQVAPA P04695 P04695 Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma Bos taurus 0.009684228999999999 2 LEVO MNLEPPKAEIRSATRVMGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHE LAQYGII P04972 3.1.4.35 ZINC ION 6.5409e-05 2 ZN MAGNESIUM ION 2.4305e-05 2 MG 2-{2-ETHOXY-5-[(4-ETHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-5-METHYL-7-PROPYLIMIDAZO[5,1-F][1,2,4]TRIAZIN-4(1H)-ONE 0.000488603 2 VDN GUANOSINE-3',5'-MONOPHOSPHATE 0.00034520499999999996 2 35G GUANOSINE-5'-TRIPHOSPHATE 0.0005231799999999999 2 GTP singleParticle particle 2 8.0

20 mM Tris pH 8.0, 5 mM MgCl2 and 1 uM vardenafil

Quantifoil R1.2/1.3 GOLD GLOW DISCHARGE ETHANE 100 295 FEI VITROBOT MARK IV

0.05% octyl glucoside was used as an additive.

FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 GATAN K3 (6k x 4k) 4.0 48.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION C1 3.2 FSC 0.143 CUT-OFF 143125 PROJECTION MATCHING MAXIMUM LIKELIHOOD BACKBONE TRACE