2024-03-06 REL RCSB RCSB RCSB 2020-08-14 2020-12-09 2020-12-09 2024-03-06 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM124204 United States Adeno-Associated Virus 2 Rep68 HD Hexamer-ssDNA with ATPgS Escalante CR AAV, Protein-DNA, AAA+, SF3, HUH, VIRAL PROTEIN, VIRAL PROTEIN-DNA complex Santosh V Musayev FN Jaiswal R Zarate-Perez F Vandewinkel B Dierckx C Endicott M Sharifi K Dryden K Henckaerts E Escalante CR The Cryo-EM structure of AAV2 Rep68 in complex with ssDNA reveals a malleable AAA+ machine that can switch between oligomeric states. Nucleic Acids Res. UK 48 12983 12999 2020 33270897 doi:10.1093/nar/gkaa1133 1362-4962 0389 NARHAD 7jsg FULLOVERLAP Rep68 Helicase in complex with ssDNA (poly-dT) Rep68 Helicase in complex with ssDNA (poly-dT) 0 1 2
Heptameric complex model of helicase domain
Adeno-associated virus - 2 0.4245 Protein Rep68 Adeno-associated virus - 2 0.060908703 7 Escherichia coli 'BL21-Gold(DE3)pLysS AG' LEVO GPPGFYEIVIKVPSDLDEHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEALFF VQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTRNGAGGGNKVVDESYIPNYLLP KTQPELQWAWTNMEQYLSACLNLTERKRLVAQHLTHVSQTQEQNKENQNPNSDAPVIRSKTSARYMELVGWLVDKGITSE KQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMSLTKTAPDYLVGQQPVEDISSNRIYKILELNGYDPQYAASVFLGW ATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVESAKAILGGSKV RVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWAKDHVVE VEHEFYVKKGGAKKRPAPSDADISEPKRVRESVAQPSTSDAEASINYADRLARGHSL P03132 3.6.4.12 DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3') synthetic construct 0.005126319999999999 1 (DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT) DNA singleParticle particle 0.75 7.9 25.0 C4H11NO3 2-amino-2-(hydroxymethyl)aminomethane 200.0 NaCl Sodium Chloride 1.0 C9H15O6P Tris(2-carboxyethyl)phosphine 0.05 C14H28O6 Octyl-glucopyranoside 5.0 C10H12N5O12P3S1 ATPgS C-flat-1.2/1.3 COPPER 400 CARBON HOLEY GLOW DISCHARGE AMYLAMINE ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) COUNTING 4555 55.46 1 294324 5.2 FSC 0.143 CUT-OFF 78701 MAXIMUM LIKELIHOOD cryoSPARC 2.5 ANGULAR RECONSTITUTION emd_22453.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 321.9 321.9 321.9 90.0 90.0 90.0 X Y Z -0.37320375 0.8154044 0.00091500755 0.0342059 1.073 1.073 1.073 0.223 AUTHOR Local refinement map of helicase domain RIGID BODY FIT