2021-09-15 REL RCSB RCSB RCSB 2020-08-10 2021-07-28 2021-07-28 2021-09-15 National Institutes of Health/National Cancer Institute (NIH/NCI) R01CA2144608 United States National Institutes of Health/National Cancer Institute (NIH/NCI) R01CA218278 United States Swiss National Science Foundation 174331 Switzerland Swiss National Science Foundation 191053 Switzerland Other private DRR-50-18 United States Cryo-EM structure of human HUWE1 (focused on WWE) Hunkeler M Fischer ES Hunkeler M Jin CY Ma MW Monda JK Overwijn D Bennett EJ Fischer ES Solenoid architecture of HUWE1 contributes to ligase activity and substrate recognition. Mol.Cell US 81 3468 3480.e7 2021 34314700 doi:10.1016/j.molcel.2021.06.032 1097-2765 2168 MOCEFL EMD-22427 other EM volume
same data set, consensus refine. Same publication
 EMD-22428 other EM volume
same data set, classified with focus on HECT. Same publication
 EMD-22430 other EM volume
same data set, classified with focus on interface. Same publication
 EMD-22431 other EM volume
same protein, non-crosslinked. Same publication
 EMD-22429 associated EM volume EMD-23931 other EM volume
from same citation
 EMD-23925 other EM volume
from same citation
 7mwe FULLOVERLAP E3 ubiquitin-protein ligase HUWE1 E3 ubiquitin-protein ligase HUWE1 0 1
full length, crosslinked with BS3, refinement after classification focused on WWE domain
Homo sapiens 0.48 Homo sapiens Expi293 pDEST E3 ubiquitin-protein ligase HUWE1 Homo sapiens Homo sapiens LEVO MDYKDDDDKLAAANSSIDLISTSLYKKAGFKGTNSVDMKVDRTKLKKTPTEAPADCRALIDKLKVCNDEQLLLELQQIKTWNIGKCELYHWVDLLDRFDGILADAGQTVENMSWMLVCDRPEREQLKMLLLAVLNFTALLIEYSFSRHLYSSIEHLTTLLASSDMQVVLAVLNLLYVFSKRSNYITRLGSDKRTPLLTRLQHLAESWGGKENGFGLAECCRDLHMMKYPPSATTLHFEFYADPGAEVKIEKRTTSNTLHYIHIEQLDKISESPSEIMESLTKMYSIPKDKQMLLFTHIRLAHGFSNHRKRLQAVQARLHAISILVYSNALQESANSILYNGLIEELVDVLQITDKQLMEIKAASLRTLTSIVHLERTPKLSSIIDCTGTASYHGFLPVLVRNCIQAMIDPSMDPYPHQFATALFSFLYHLASYDAGGEALVSCGMMEALLKVIKFLGDEQDQITFVTRAVRVVDLITNLDMAAFQSHSGLSIFIYRLEHEVDLCRKECPFVIKPKIQRPNTTQEGEEMETDMDGVQCIPQRAALLKSMLNFLKKAIQDPAFSDGIRHVMDGSLPTSLKHIISNAEYYGPSLFLLATEVVTVFVFQEPSLLSSLQDNGLTDVMLHALLIKDVPATREVLGSLPNVFSALCLNARGLQSFVQCQPFERLFKVLLSPDYLPAMRRRRSSDPLGDTASNLGSAVDELMRHQPTLKTDATTAIIKLLEEICNLGRDPKYICQKPSIQKADGTATAPPPRSNHAAEEASSEDEEEEEVQAMQSFNSTQQNETEPNQQVVGTEERIPIPLMDYILNVMKFVESILSNNTTDDHCQEFVNQKGLLPLVTILGLPNLPIDFPTSAACQAVAGVCKSILTLSHEPKVLQEGLLQLDSILSSLEPLHRPIESPGGSVLLRELACAGNVADATLSAQATPLLHALTAAHAYIMMFVHTCRVGQSEIRSISVNQWGSQLGLSVLSKLSQLYCSLVWESTVLLSLCTPNSLPSGCEFGQADMQKLVPKDEKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKGKSKITPAMAARIKQIKPLLSASSRLGRALAELFGLLVKLCVGSPVRQRRSHHAASTTTAPTPAARSTASALTKLLTKGLSWQPPPYTPTPRFRLTFFICSVGFTSPMLFDERKYPYHLMLQKFLCSGGHNALFETFNWALSMGGKVPVSEGLEHSDLPDGTGEFLDAWLMLVEKMVNPTTVLESPHSLPAKLPGGVQNFPQFSALRFLVVTQKAAFTCIKNLWNRKPLKVYGGRMAESMLAILCHILRGEPVIRERLSKEKEGSRGEEDTGQEEGGSRREPQVNQQQLQQLMDMGFTREHAMEALLNTSTMEQATEYLLTHPPPIMGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAESPEEVACRKEEEERKAREKQEEEEAKCLEKFQDADPLEQDELHTFTDTMLPGCFHLLDELPDTVYRVCDLIMTAIKRNGADYRDMILKQVVNQVWEAADVLIKAALPLTTSDTKTVSEWISQMATLPQASNLATRILLLTLLFEELKLPCAWVVESSGILNVLIKLLEVVQPCLQAAKEQKEVQTPKWITPVLLLIDFYEKTAISSKRRAQMTKYLQSNSNNWRWFDDRSGRWCSYSASNNSTIDSAWKSGETSVRFTAGRRRYTVQFTTMVQVNEETGNRRPVMLTLLRVPRLNKNSKNSNGQELEKTLEESKEMDIKRKENKGNDTPLALESTNTEKETSLEETKIGEILIQGLTEDMVTVLIRACVSMLGVPVDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNGFTPLVTLLLRHIIEDPCTLRHTMEKVVRSAATSGAGSTTSGVVSGSLGSREINYILRVLGPAACRNPDIFTEVANCCIRIALPAPRGSGTASDDEFENLRIKGPNAVQLVKTTPLKPSPLPVIPDTIKEVIYDMLNALAAYHAPEEADKSDPKPGVMTQEVGQLLQDMGDDVYQQYRSLTRQSSDFDTQSGFSINSQVFAADGASTETSASGTSQGEASTPEESRDGKKDKEGDRASEEGKQKGKGSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPHTQNAEDKDTPALARLFLASLAAAGSGTDAQVALVNEVKAALGRALAMAESTEKHARLQAVMCIISTIMESCPSTSSFYSSATAKTQHNGMNNIIRLFLKKGLVNDLARVPHSLDLSSPNMANTVNAALKPLETLSRIVNQPSSLFGSKSASSKNKSEQDAQGASQDSSSNQQDPGEPGEAEVQEEDHDVTQTEVADGDIMDGEAETDSVVIAGQPEVLSSQEMQVENELEDLIDELLERDGGSGNSTIIVSRSGEDESQEDVLMDEAPSNLSQASTLQANREDSMNILDPEDEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYPDMNASPLVRFERFDREDDLIIEFDNMFSSATDIPPSPGNIPTTHPLMVRHADHSSLTLGSGSSTTRLTQGIGRSQRTLRQLTANTGHTIHVHYPGNRQPNPPLILQRLLGPSAAADILQLSSSLPLQSRGRARLLVGNDDVHIIARSDDELLDDFFHDQSTATSQAGTLSSIPTALTRWTEECKVLDAESMHDCVSVVKVSIVNHLEFLRDEELEERREKRRKQLAEEETKITDKGKEDKENRDQSAQCTASKSNDSTEQNLSDGTPMPDSYPTTPSSTDAATSESKETLGTLQSSQQQPTLPTPPALGEVPQELQSPAGEGGSSTQLLMPVEPEELGPTRPSGEAETTQMELSPAPTITSLSPERAEDSDALTAVSSQLEGSPMDTSSLASCTLEEAVGDTSAAGSSEQPRAGSSTPGDAPPAVAEVQGRSDGSGESAQPPEDSSPPASSESSSTRDSAVAISGADSRGILEEPLPSTSSEEEDPLAGISLPEGVDPSFLAALPDDIRREVLQNQLGIRPPTRTAPSTNSSAPAVVGNPGVTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNASSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSSSHNRPSGSNVDTLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSSESELCIETPKLTTSEEKGKKSSKSCGSSSHENRPLDLLHKMESKSSNQLSWLSVSMDAALGCRTNIFQIQRSGGRKHTEKHASGGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDRERGNKACSPCSSQSSSSGICTDFWDLLVKLDNMNVSRKGKNSVKSVPVSAGGEGETSPYSLEASPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPENKVSEAQANSGSGASSTTTATSTTSTTTTTAASTTPTPPTAPTPVTSAPALVAATAISTIVVAASTTVTTPTTATTTVSISPTTKGSKSPAKVSDGGSSSTDFKMVSSGLTENQLQLSVEVLTSHSCSEEGLEDAANVLLQLSRGDSGTRDTVLKLLLNGARHLGYTLCKQIGTLLAELREYNLEQQRRAQCETLSPDGLPEEQPQTTKLKGKMQSRFDMAENVVIVASQKRPLGGRELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTGRLGSSGLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSESSQSEASVRREESPMDVDQPSPSAQDTQSIASDGTPQGEKEKEERPPELPLLSEQLSLDELWDMLGECLKELEESHDQHAVLVLQPAVEAFFLVHATERESKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSSLPPDTQKFLRFAETHRTVLNQILRQSTTHLADGPFAVLVDYIRVLDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA 2.3.2.26 singleParticle particle 0.9 7.4 50.0 C8H18N2O4S (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid) 150.0 NaCl Sodium chloride Quantifoil R1.2/1.3 COPPER 300 CARBON HOLEY ARRAY 12.0 GLOW DISCHARGE AIR 0.039 ETHANE 95 283 LEICA EM GP
CHAPSO detergent added to final conc. of 0.8 mM. Sample applied twice..
Sample crosslinked with BS3. Monodisperse.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 -0.8 -2.5 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN
Data colleciton in counting mode, using multi-shot scheme (4 holes per stage position, 3 movies per hole)
GATAN K3 BIOQUANTUM (6k x 4k) 5760 4092 1 10390 2.4 45.68 1 2110785 CTFFIND RELION
standard correction in Relion
de novo model generated in cryoSPARCv2
 1 C1 BACK PROJECTION 3.4 FSC 0.143 CUT-OFF RELION
as implemented in Relion
85184 MAXIMUM LIKELIHOOD RELION
Relion
 MAXIMUM LIKELIHOOD RELION 8 90000.0 RELION
classification with mask focusing on WWE domain
 emd_22429.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 364 364 364 0 0 0 364 364 364 300.3 300.3 300.3 90.0 90.0 90.0 X Y Z -0.048377056 0.10057423 0.00017564536 0.0021366482 0.825 0.825 0.825 0.0165 AUTHOR map from refinement after classification focused on WWE emd_22429_msk_1.map emd_22429_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 364 364 364 0 0 0 364 364 364 300.3255 300.3255 300.3255 90.0 90.0 90.0 X Y Z -0.0017782018 1.84057 0.0012500908 0.025680205 0.8250701 0.8250701 0.8250701 AUTHOR main map postprocessed with deepEMhancer emd_22429_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 364 364 364 0 0 0 364 364 364 300.3 300.3 300.3 90.0 90.0 90.0 X Y Z -0.022373622 0.06369806 0.00017477697 0.0016231525 0.825 0.825 0.825 AUTHOR main map blurred to B=-20A2 emd_22429_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 364 364 364 0 0 0 364 364 364 300.3 300.3 300.3 90.0 90.0 90.0 X Y Z -0.014159019 0.050576694 0.00017456294 0.0014702665 0.825 0.825 0.825 AUTHOR main map blurred to B=10A2 emd_22429_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 364 364 364 0 0 0 364 364 364 309.4 309.4 309.4 90.0 90.0 90.0 X Y Z -0.039413508 0.06599606 -8.20989e-05 0.003979848 0.84999996 0.84999996 0.84999996 AUTHOR half map 2 emd_22429_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 364 364 364 0 0 0 364 364 364 309.4 309.4 309.4 90.0 90.0 90.0 X Y Z -0.037768673 0.06587738 -8.484041e-05 0.003988198 0.84999996 0.84999996 0.84999996 AUTHOR half map 1