2024-10-30 REL RCSB RCSB RCSB 2020-07-13 2020-10-07 2020-10-07 2024-10-30 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM103310 United States Other private SF349247 United States Cryo-EM structure of SHIV-elicited RHA1.V2.01 in complex with HIV-1 Env BG505 DS-SOSIP.664 Gorman J Kwong PD SHIV, V1V2, V2-Apex, SOSIP, Vaccine, PGT145, IMMUNE SYSTEM, IMMUNE SYSTEM-Viral Protein complex Roark RS Li H Williams WB Chug H Mason RD Gorman J Wang S Lee FH Rando J Bonsignori M Hwang KK Saunders KO Wiehe K Moody MA Hraber PT Wagh K Giorgi EE Russell RM Bibollet-Ruche F Liu W Connell J Smith AG DeVoto J Murphy AI Smith J Ding W Zhao C Chohan N Okumura M Rosario C Ding Y Lindemuth E Bauer AM Bar KJ Ambrozak D Chao CW Chuang GY Geng H Lin BC Louder MK Nguyen R Zhang B Lewis MG Raymond DD Doria-Rose NA Schramm CA Douek DC Roederer M Kepler TB Kelsoe G Mascola JR Kwong PD Korber BT Harrison SC Haynes BF Hahn BH Shaw GM Recapitulation of HIV-1 Env-antibody coevolution in macaques leading to neutralization breadth. Science US 371 2021 33214287 doi:10.1126/science.abd2638 1095-9203 0038 SCIEAS 6xrt FULLOVERLAP Cryo-EM structure of SHIV-elicited RHA1.V2.01 in complex with HIV-1 Env BG505 DS-SOSIP Cryo-EM structure of SHIV-elicited RHA1.V2.01 in complex with HIV-1 Env BG505 DS-SOSIP 0 1 2 3 4 Cryo-EM structure of SHIV-elicited RHA1.V2.01 in complex with HIV-1 Env BG505 DS-SOSIP.664 1 1 2 3 4 Human immunodeficiency virus 1 Envelope glycoprotein gp160 Human immunodeficiency virus 1 0.053300348 3 Homo sapiens LEVO AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIIS LWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKE YRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEV MIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRK HFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQ CMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGR Q2N0S6 HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41 Human immunodeficiency virus 1 0.017146481999999998 3 Homo sapiens LEVO AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQ LLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD Q2N0S6 VRC01.23 Heavy Chain Macaca mulatta 0.01470429 1 Homo sapiens LEVO QVQLRESGPGLVKPSETLVLTCAVSGGGDSFGFHYWNWIRQPPGKGLEWIGHIGGSSGSTDFNPSLKSRVTISMDSSRNQ FSLRLKSVTAADTAVYFCARKGEDFYEDD(TYS)GQYFTAGWFFDLWGPGTPIIISS VRC01.23 Light Chain Macaca mulatta 0.011312331 1 Homo sapiens LEVO QFVLTQPPSVSGAPGQTVTISCTGRSSNFGGHYVQWYQQLPGTAPRLVIFENDRRPSGVSDRFSGSQSGASASLTITGLQ SEDEADYYCQCYDSSVLFGRGTRLT 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 40 NAG singleParticle particle 2.0 7.4 PBS C-flat-1.2/1.3 COPPER CARBON HOLEY PLASMA CLEANING ETHANE 90 293 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K2 SUMMIT (4k x 4k) COUNTING 1 1945 10.0 71.06 1 FOURIER SPACE 3.9 FSC 0.143 CUT-OFF cryoSPARC 2.14 21480 NOT APPLICABLE NOT APPLICABLE cryoSPARC 2.14 emd_22295.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 308.16 308.16 308.16 90.0 90.0 90.0 X Y Z -0.34115198 1.5054345 0.014455143 0.071347974 1.07 1.07 1.07 0.55 AUTHOR Sharpened Map 4TVP PDB experimental model FLEXIBLE FIT REAL emd_22295_msk_1.map emd_22295_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 308.16 308.16 308.16 90.0 90.0 90.0 X Y Z -0.0 1.3071431 0.014589042 0.06740493 1.07 1.07 1.07 AUTHOR Unsharpened Map emd_22295_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 169 123 115 72 83 78 115 123 169 123.05 131.61 180.83 90.0 90.0 90.0 Z Y X -1.3367043 1.8028479 0.000000000002301 0.13773443 1.07 1.07 1.07 AUTHOR Density modified map emd_22295_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 308.16 308.16 308.16 90.0 90.0 90.0 X Y Z -1.551911 2.0606546 0.0068968777 0.21436524 1.07 1.07 1.07 AUTHOR Half map A emd_22295_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 308.16 308.16 308.16 90.0 90.0 90.0 X Y Z -1.6932578 1.9413521 0.007068069 0.21450515 1.07 1.07 1.07 AUTHOR Half map B