<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2229" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2012-10-30</deposition>
         <header_release>2012-11-07</header_release>
         <map_release>2013-01-09</map_release>
         <update>2013-02-13</update>
      </key_dates>
      <title>The architecture of human general transcription factor TFIID core complex</title>
      <authors_list>
         <author>Bieniossek C</author>
         <author>Papai G</author>
         <author>Schaffitzel C</author>
         <author>Garzoni F</author>
         <author>Chaillet M</author>
         <author>Scheer E</author>
         <author>Papadopoulos P</author>
         <author>Tora L</author>
         <author>Schultz P</author>
         <author>Berger I</author>
      </authors_list>
      <keywords>human TFIID, general transcription factor, transcription, multibac, recombinant protein</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Bieniossek C</author>
               <author order="2">Papai G</author>
               <author order="3">Schaffitzel C</author>
               <author order="4">Garzoni F</author>
               <author order="5">Chaillet M</author>
               <author order="6">Scheer E</author>
               <author order="7">Papadopoulos P</author>
               <author order="8">Tora L</author>
               <author order="9">Schultz P</author>
               <author order="10">Berger I</author>
               <title>The architecture of human general transcription factor TFIID core complex.</title>
               <journal>NATURE</journal>
               <volume>493</volume>
               <first_page>699</first_page>
               <last_page>702</last_page>
               <year>2013</year>
               <external_references type="PUBMED">23292512</external_references>
               <external_references type="DOI">doi:10.1038/nature11791</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <emdb_list>
         <emdb_reference>
            <emdb_id>EMD-2230</emdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </emdb_reference>
         <emdb_reference>
            <emdb_id>EMD-2231</emdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </emdb_reference>
      </emdb_list>
   </crossreferences>
   <sample>
      <name>Recombinant human 3TAF complex containing TAF5, TAF6 and TAF9.</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Recombinant human 3TAF complex containing TAF5, TAF6 and TAF9.</name>
            <details>The sample was fixed by GraFix.</details>
            <oligomeric_state>Dimer</oligomeric_state>
            <number_unique_components>3</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">0.4</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="TAF5">TATA box binding protein (TBP)-associated factor 5</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
               <cellular_location>Nucleus</cellular_location>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.1</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>Dimer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism>Baculovirus EMBacY</recombinant_organism>
               <recombinant_plasmid>pTF</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="GO">GO:0015629</external_references>
               <external_references type="GO">GO:0005669</external_references>
               <external_references type="GO">GO:0033276</external_references>
               <external_references type="GO">GO:0003700</external_references>
               <external_references type="GO">GO:0044212</external_references>
               <external_references type="GO">GO:0016573</external_references>
               <external_references type="GO">GO:0006368</external_references>
               <external_references type="GO">GO:0006367</external_references>
               <external_references type="GO">GO:0016032</external_references>
               <external_references type="GO">GO:0019048</external_references>
               <external_references type="INTERPRO">IPR001680</external_references>
               <external_references type="INTERPRO">IPR006594</external_references>
               <external_references type="INTERPRO">IPR007582</external_references>
               <external_references type="INTERPRO">IPR015943</external_references>
               <external_references type="INTERPRO">IPR017986</external_references>
               <external_references type="INTERPRO">IPR019775</external_references>
               <external_references type="INTERPRO">IPR020472</external_references>
            </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name synonym="TAF6">TATA box binding protein (TBP)-associated factor 6</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
               <cellular_location>Nucleus</cellular_location>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.07</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>Dimer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism>Baculovirus EMBacY</recombinant_organism>
               <recombinant_plasmid>pTF</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="GO">GO:0015629</external_references>
               <external_references type="GO">GO:0005669</external_references>
               <external_references type="GO">GO:0033276</external_references>
               <external_references type="GO">GO:0003700</external_references>
               <external_references type="GO">GO:0044212</external_references>
               <external_references type="GO">GO:0016573</external_references>
               <external_references type="GO">GO:0006368</external_references>
               <external_references type="GO">GO:0006367</external_references>
               <external_references type="GO">GO:0016032</external_references>
               <external_references type="GO">GO:0019048</external_references>
               <external_references type="INTERPRO">IPR004823</external_references>
               <external_references type="INTERPRO">IPR009072</external_references>
               <external_references type="INTERPRO">IPR011442</external_references>
            </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="3">
            <name synonym="TAF9">TATA box binding protein (TBP)-associated factor 9</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
               <cellular_location>Nucleus</cellular_location>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.032</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>Dimer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism>Baculovirus EMBacY</recombinant_organism>
               <recombinant_plasmid>pTF</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="GO">GO:0015629</external_references>
               <external_references type="GO">GO:0005669</external_references>
               <external_references type="GO">GO:0033276</external_references>
               <external_references type="GO">GO:0003700</external_references>
               <external_references type="GO">GO:0044212</external_references>
               <external_references type="GO">GO:0016573</external_references>
               <external_references type="GO">GO:0006368</external_references>
               <external_references type="GO">GO:0006367</external_references>
               <external_references type="GO">GO:0016032</external_references>
               <external_references type="GO">GO:0019048</external_references>
               <external_references type="INTERPRO">IPR003162</external_references>
               <external_references type="INTERPRO">IPR009072</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.5</concentration>
               <buffer>
                  <ph>8.0</ph>
                  <details>50mM HEPES pH 8.0, 150mM KCl</details>
               </buffer>
               <grid>
                  <details>Quantifoil 300 mesh Cu/Rh holey carbon grid R2/2</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">95</chamber_humidity>
                  <instrument>FEI VITROBOT MARK IV</instrument>
                  <method>4s, blot force 5</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI 20</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2.0</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.2</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.45</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <calibrated_magnification>50012.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <date>2010-09-15</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>OTHER</scanner>
                        <sampling_interval units="&#181;m">10.16</sampling_interval>
                     </digitization_details>
                     <number_real_images>16</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">16</average_electron_dose_per_image>
                     <bits_per_pixel>16.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Picking was done with e2boxer from EMAN2, first alignment cycles were done in Imagic and refinement in Spider.</details>
            <ctf_correction>
               <details>Each particle</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C2</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">12.8</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>Imagic, Spider</name>
                  </software>
               </software_list>
               <number_images_used>11987</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="8193">
      <file>emd_2229.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>128</col>
         <row>128</row>
         <sec>128</sec>
      </dimensions>
      <origin>
         <col>-64</col>
         <row>-64</row>
         <sec>-64</sec>
      </origin>
      <spacing>
         <x>128</x>
         <y>128</y>
         <z>128</z>
      </spacing>
      <cell>
         <a units="&#8491;">260.096</a>
         <b units="&#8491;">260.096</b>
         <c units="&#8491;">260.096</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-8.633073810000001</minimum>
         <maximum>27.51564789</maximum>
         <average>0.00000002</average>
         <std>2.00000024</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.032</x>
         <y units="&#8491;">2.032</y>
         <z units="&#8491;">2.032</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>2.0</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Cryo-EM structure of the recombinant human 3TAF complex</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2229::::</details>
   </map>
</emd>