2025-05-21 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name DATABASE_REFERENCES chem_comp_atom chem_comp_bond database_2 _database_2.pdbx_DOI _database_2.pdbx_database_accession STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details _em_admin.last_update _em_software.name RCSB RCSB 2020-07-08 2021-03-03 2021-03-03 2025-05-21 Zhang HQ Chen DC Transcription Zhang H Chen DH Mattoo RUH Bushnell DA Wang Y Yuan C Wang L Wang C Davis RE Nie Y Kornberg RD Mol.Cell US 81 1781 1788.e4 2021 33571424 doi:10.1016/j.molcel.2021.01.022 1097-2765 2168 MOCEFL 6xp5 FULLOVERLAP Head-Middle module of Mediator Head-Middle module of Mediator 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 Chaetomium thermophilum Mediator of RNA polymerase II transcription subunit 21 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.015718674 1 Chaetomium thermophilum LEVO DRLTQLQEAMDELLEMFLSAFFWVERHHDLKTFGPNDKIPDLKADQPKEVDTKSPEEYKAGQLQLARDIIVKEQQIEYLI STLPGLDNSEREQIQLLRELEDDLVTAEAQRQEALKERDEVLGKLDALLRGLERP G0S8E0 Mediator of RNA polymerase II transcription subunit 4 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.037924664 1 Chaetomium thermophilum LEVO MDKELDGRFERLEKALATMIDSLSKNNPSTKLAQDLVAAEAELLEGLKLLEAHQNNHARIQQLRQSTEQADAQIKDIISS LWKMRQELTSVQTSPIPKGAKFQFTTGELLDFARRISRNTLPPPGVTNGVNMTPAAARHSQQPSSVEPEDSFRVTSQSQT QTPNTSFNVSFNGTLVDTPGPFNNNSTPIPNAGPANSQNPHTELPEHLKLATNPLHGASFFPWPSVEQVRSGALGAYQLL VDKGIDPRGYDPEFEEQRRKDAEREAEERAKQEREEAERRAREEAERIARQRELERQRARESMAAAAEEGRRDSVVGGPA AGKPKQFTFLGGDDDDDDDDD G0S7Z4 Mediator of RNA polymerase II transcription subunit 6 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.036470812 1 Chaetomium thermophilum LEVO MADPSSSTSAMPLDEIQWHTNPAVVGGSIHDNSVLFYFRESPFYDKTSNNEVLYQQGLHNQTMMQFLETRERFERRLREM SGLEFVVAQEPAETAPGTGTGVWVINKQTRRKRQGEEDEISVHGTYFLVGENVYMAAPTLADIISMRLASASSSISRLLP IAASVQSWSPGTGRVYKTPSMTSQTNQANQPSSQTQSQPTSQPATTTTTTALPPPDPRWLEETLMIHEFFGDHHLDKNPI TGKPGDFHLSSTGRKIQTLPTAAAGNKKPGSGLPPLPAINTKVQQNPMGSGKQVTGKETKSPKTPSSSTGPGTGGMSTGM GKPKKRKSSKAAVTPTS G0SGT8 Mediator of RNA polymerase II transcription subunit 7 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.027738226999999997 1 Chaetomium thermophilum LEVO MDSSEDDGNKVAHLWPDPPAFWKDFTPENIERYNALKQTYAQQHGLSSDALVRIPDVPADLINLQPPPEPVDGKWKLYGQ QEALANSLQSLEDAGIQRLAPASETTSDSKHFDRGFELKKLAKSLLVNYLELMGIMSINPAHASEKVQDIKTIVLNFHHI LNEYRPHQAREQLIQLMQDHLDAKRNETAAVRAVVDKAKRLIEGLASIEIPKVEDDNGRKAVEVERAALAERREIAAWQE ADALFT G0SEM4 Mediator of RNA polymerase II transcription subunit 9 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.018325607 1 Chaetomium thermophilum LEVO MTAPLPEGLTPDAVDTLTELSAIIKKLRAAQQQQAANPSSQAAAGGPGTTGAPGSQPSSSGPNATAAGGAIGTTSLPSSA TTGPTPSNALHSVKELPATTDPIKHKLQRARAAVRLLGDMSRTMAQQEAELARLEERRRKQAAMLAKAQEEGARLSKGFG EVGETPVVLVETGDKMAME G0S292 Mediator of RNA polymerase II transcription subunit 14 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.133450359 1 Chaetomium thermophilum LEVO MEARAHGALPNNYDRERFINGVGGDDKALKRKLEEPLSDITKELDTVIAQSDVAVADPKGQLCPDADVPDEMEHITDGIL PLNLLLIRLAEFSHSKLEELVTMLASKPVPQHAVNGNGSHSTLVEDASPESQEKKRLLLNTIQDLHSRWVKALVITEWAR NAEKVGKLIDIRTHLFKKLELYPQVLNDFINLKRDMAWAKVPSPDLKTALHILTHGEVTWMPDFNFLDPPPLTTEETLRW INDMNLALHARLQLEEHDKLPPPFKNYTIDSGRVTFRVRGEFEVDLSISEEDFSEQFWFINFRFDFSPAPAELTPAVRYW MTEKVNNILKTEGLGGCYKYLHEFTLTQKIAELHRQAIALNKGRWANSLRVEKLNRNLGIHYWANRLHSQNLKSWIIIGV HSGEDPQGLEEPKPSYLMVQWFREGVEQFIDIPFSQEKLSIEEILEFVTAKHVGYLLFSLFRKFDGKPRFTQGKKARLEL NVWTQKPEDYYLSMQLLDDEDLKIQVNPWMGDFITTPSTGPWNRTLNSLGNPAEEGSKELENFRYIYIISVLKAQGKSHG WSVVRSPISQDELRSIVHSESASSRETFQAAWTRFVDWDPQWYAMRSMSLAGDQWWLVEVTSQRQSISGNRLVFFTKMAP CFSEERLTDGFFNGLRDHSRRLIAEITNLRELYPGITPSQLRKLIDPTRQPPVLPVKASKILGDFGGADAQSIAWLKDPV WLIYRGSACDAAATRVSDSPQQKRTQPVLDVFEAYLDVTDRRRFQTLNPRLDRDILYNPYTGRFMFRLRAKMGVPVVPLL GIRVRQLQRLLDFLEGLRRVGDQAVPERVTLREIVFSYGATRKRDSTNQPKVRPWRVRLDLTKEEGVGVVLEKGNPHLRV INRLEDLVNSQKFYSLATYLTLSLPLFRAFEQLENAWQTAQENGRGSCFILHLSLDKHTIRFVLPGHQRQISLLIQPHEK EGKLVWEVGRPRHDPELLNENCEFNRVLKERVWTISGSGFKGLVTGAAAEPDEGIERLLVLISDAVLHLSTSQPATAPPQ PPQAQPSQQVQQVQQQQVVSQLQPQAQQPRSAMPHASVGQQQPHGAPAPMARFPPQQQQIFQQQRPPQPQPNMHGGQISQ PNMHGGPKPQLQGQHGQPGQMVAAPQQQGQRPGTGTAAGMGRSNAPLVVLD G0SCL5 Mediator of RNA polymerase II transcription subunit 17 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.06961693 1 Chaetomium thermophilum LEVO MTDRPFILQVPPTQQRGPQNIAEFVARINPDAFRVLNEAELRRKVEEEKNGVGQDEDVDMESSPSDNEGEPADAKDIITA KHEMLRVIDQTRQTTLYALDFVSLLLSKENPGQAVTTFSPGLRELVGIGTLGATMLDAPTPLTQSRIPDNKLVTIGKRLM DLNKAADTALAASKRLQKEIAAETKYWSEVLAVRNDGWQTSRMPREPQTMGVKFGFNNAAPEFKAVSIAPMRRADNGSVL LDRSSIGHKSQRIQVRILEDGRIVGRSSLPSPVSADAPLQDRVKEMRDTIFAQELWHEINREARTLLNQGVHLEPSSITY TMDASTTVSIRLATLGEEEEGLDEQQEGPQDVMAESLNIALSLLLSHAHRMNELRRSEPGINKGPPRTYPILLPLISYHK YNQSIQTCLQTLSAHISVLRSASVDSSMTVKEPLLSSPPGAPAATSLYTILTRPPAVQFDITITPDSRIRILLKPTQLTG AAFSICCLPALHPGAQNPLATTCPPSTDDYDSLTQVVSYLQAAIPRALAAHYEAVLVVEATVNGGMLGDLPPSPSRWMPL IDGKGIVDPETMRFGIRFSFGRNPAKGGQLELGAQTDYVDGSRKRVRRNWIWPGAQSSLDSVAKHVLARGPPEE G0S1R5 Mediator of RNA polymerase II transcription subunit 31 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.014486557 1 Chaetomium thermophilum LEVO MSVDSSGMEPPPLPSDGPEEPKHGGHTRFELELEFVQALSNPEYVNWLASRKYLMNPAFVAYLDYLQYWSRPPYLKYLTY PTATLRMLQLLQSERFRQEILVPDVAWQLRLEGMKAAVLWHKEG G0S1W4 Mediator of RNA polymerase II transcription subunit 8 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.032098467 1 Chaetomium thermophilum LEVO MASLNLAPEELKQLELLRNRFAQLQSSLTSLAGNLIRTEPLPTYESLQASASILQQNLRSIQELMTENSDIFKRIAIHPS TNFPGRTQEHMLLQLLRKKLEPEVESWVEEARETARAAGIDVSKLSGPGGGAPTRGMNGYGDDDEYGLDDEDEGVPSDPF NEQWADMLETFQHSLHHYVTVQLKKQYTVEEQEMGIENVRTGLKRELGDEDEDEDEDEEEEEEGVAGVAGGAASQGAGAG TAGAAAKKPVIQPEYLFWLAARGDTRVSRNIEFEAMRKVAQTAKRPAPPR G0SCZ3 Mediator of RNA polymerase II transcription subunit 11 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.02550427 1 Chaetomium thermophilum LEVO MAQPSQSSVPESDAGSFPVDIHKPFTPAERIQQLGEIDNDIASLLQHLSAALKALATPPGKRIFQEQDSESNSPSASDTS NPNDTPPSSCGIDPVTAFKTAQNDFFRTIDRIDKHLTRQIYALEEAGIITLKSGTGSGAGTVGAGATEEQAQQLPQPQMI PGQPQAAGITADASVAPVPKARLEPDGMGRYGKLDVGRLNMASSIVEREMEGELWRKAREHLGRMTSQASGREDRMEE G0SH09 Mediator of RNA polymerase II transcription subunit 18 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.038725749999999996 1 Chaetomium thermophilum LEVO MPYEIFLAGVVSDNDEAKARAVLGGFTEMREHHRFTRVQHYEPQDIKIRGFPTIKELLKERGPTTALYQELHNILVRQPY TLQIRTNITDAILGPAQAGAEAAPHGTVSGGKPHILRWSDIPDPPNQRIPPFITQRKIIEIPDQRAPRILAASKFRNKSD LVEESYHWWFNDVEYSMVRTYLISLDPSPQTTDQVPSLAGLEPIGDFWLLYVRMRVEATPDRMQQAHNQLQQIRDQLLGV FEFKVWDRRAHDTRIMEQPTQGNGNVIGDAHNSNKKSNGVSPTTASSSEEVSPVDSQLTIPLPDDDDGDNVEDTPDTEMD EDDDESEYDSDSERDWPKDD G0RYQ4 Med22 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.018341615000000002 1 Chaetomium thermophilum LEVO MDRDQGASDNLLERKNILIASIMTSYRDLITHATSPITSATASPGHAGYSSMALSTAIHAAVKYTEDLLSLTRTLREALW VVGPLTGPGEKDAQAEEGMAKDAEVVWDVLNEMRDRERERMMAALMEGDTRVRGAVRFERGDVEVVVAGQGQQIEMGRGV NGEVKSEGA G0S3J8 Mediator of RNA polymerase II transcription subunit 1 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.081633266 1 Chaetomium thermophilum LEVO MSTPIPTPGRNPLQGRTPSQAHGAAGTPPVSTPFSAAQAVFSPNGPRSSPQQFKRSPATVGSTTATGGRPPSAINFDSPS ASAALGALQPMTPGMDMTIRSLANLGRASEDERAKRLEEVIHILSKSKGLVSEAGLERLARSLELEFMWESSMGSDNKRT LIVAGSALELLVEFSQDVVQSVTLNFPDSPEIVTKHAQKAGEILFNDLRLAPGQSPLTKSLARFAANFERLAVLDKLSIL PGLNLYEAVADVYESLARLHAWELQKLREDPSLAGKDDEYLENLVLCTKSGKPAMNDRGRVGLALDYWKEKHLLRTPEAE VASWIADNERTWSILIGCAPLRDLSINPVRISDKWIGPNVVKTSLPDGLHTGEPIIDWLDPEPTFIPATDQQQQQQQQQQ QQQQQQQQQQQADAPLLPPRLPEVAFHAVFDPPVHIPINLWQHLQEMGCVLPDETATQPFQQHHFRSFDSLVIPPPQGKE TDATETRVFSCRKKTPFVPRRSGVRNGEGATQKMEYRIHQNTLFVPKPVMCRTLTEMSFSHPQQLVSILPYLRQYAFLAQ LLENSFKPGPALQLPTDPNADTTTSKPTPNAKASHKKLDDFEAFLAKHSSHSGPISNMTPSQHQPSSDLSIDVTLRLVLP SPKLQIVFPLHATSKEEVKGKIAHVTFAVRENGRLEVEMQNMIEEEGDQMEGVKTEGDEDGEEKKRRRPQPGDLARALEV LEDVGKWAEFVRTRWV G0SEC7 Unknown peptide Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) DSM 1495 / CBS 144.50 / IMI 039719 0.001805216 1 Chaetomium thermophilum LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK) HEAT Chaetomium thermophilum 0.017038955 1 Chaetomium thermophilum LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) singleParticle particle 1 8.0 ETHANE FEI TITAN KRIOS OTHER OTHER FIELD EMISSION GUN 300 GATAN K3 (6k x 4k) 60.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 5N9J 4.2 FSC 0.143 CUT-OFF 108348 ANGULAR RECONSTITUTION ANGULAR RECONSTITUTION