2026-08-12 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY STRUCTURE_SUMMARY em_admin entity _em_admin.last_update _entity.formula_weight STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond database_2 em_3d_fitting_list em_admin pdbx_entry_details pdbx_initial_refinement_model pdbx_modification_feature _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_admin.last_update _pdbx_entry_details.has_protein_modification REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY chem_comp chem_comp_atom chem_comp_bond em_admin entity pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_validate_chiral _chem_comp.formula _chem_comp.formula_weight _em_admin.last_update _entity.formula_weight RCSB RCSB 2020-06-27 2020-12-30 2020-12-30 2026-08-12 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01-GM38237 United States Department of Energy (DOE, United States) DE-FG02-91ER20052 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01-GM123233 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) T32-GM008275 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) S10OD023592 United States Israel Science Foundation 1466/18 Israel United States - Israel Binational Science Foundation (BSF) 2016070 Israel Israel Ministry of Science and Technology 80802 Israel R. capsulatus cyt bc1 with both FeS proteins in c position (CIII2 c-c) Steimle S Van Eeuwen T cytochrome bc1, membrane protein complex, ubiquinone:cytochrome c oxidoreductase, Complex III, OXIDOREDUCTASE, TRANSLOCASE-Oxidoreductase complex Steimle S van Eeuwen T Ozturk Y Kim HJ Braitbard M Selamoglu N Garcia BA Schneidman-Duhovny D Murakami K Daldal F Cryo-EM structures of engineered active bc 1 -cbb 3 type CIII 2 CIV super-complexes and electronic communication between the complexes. Nat Commun UK 12 929 929 2021 33568648 doi:10.1038/s41467-021-21051-4 2041-1723 6xkt FULLOVERLAP PDB 6XI0 unspecified
6XI0 contains the same protein in a different conformation, it was obtained from the same dataset
 EMDB EMD-22224 associated EM volume
R. capsulatus cyt bc1 with both FeS proteins in c position (CIII2 c-c)
 homodimer of ubiquinol:cytochrome c reductase (complex III or cyt bc1 complex) homodimer of ubiquinol:cytochrome c reductase (complex III or cyt bc1 complex) 0 1 2 3 Rhodobacter capsulatus SB 1003 0.25 Cytochrome b Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) ATCC BAA-309 / NBRC 16581 / SB1003 0.049386468999999995 2 Rhodobacter capsulatus SB 1003 LEVO MSGIPHDHYEPKTGIEKWLHDRLPIVGLVYDTIMIPTPKNLNWWWIWGIVLAFTLVLQIVTGIVLAMHYTPHVDLAFASV EHIMRDVNGGWAMRYIHANGASLFFLAVYIHIFRGLYYGSYKAPREITWIVGMVIYLLMMGTAFMGYVLPWGQMSFWGAT VITGLFGAIPGIGPSIQAWLLGGPAVDNATLNRFFSLHYLLPFVIAALVAIHIWAFHTTGNNNPTGVEVRRTSKADAEKD TLPFWPYFVIKDLFALALVLLGFFAVVAYMPNYLGHPDNYVQANPLSTPAHIVPEWYFLPFYAILRAFAADVWVVILVDG LTFGIVDAKFFGVIAMFGAIAVMALAPWLDTSKVRSGAYRPKFRMWFWFLVLDFVVLTWVGAMPTEYPYDWISLIASTYW FAYFLVILPLLGATEKPEPIPASIEEDFNSHYGNPAE D5ANZ3 Cytochrome c1 Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) ATCC BAA-309 / NBRC 16581 / SB1003 0.030352615 2 Rhodobacter capsulatus SB 1003 LEVO MKKLLISAVSALVLGSGAAFANSNVPDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPT FVREYAAGLDTIIDKDSGEERDRKETDMFPTRVGDGMGPDLSVMAKARAGFSGPAGSGMNQLFKGMGGPEYIYNYVIGFE ENPECAPEGIDGYYYNKTFQIGGVPDTCKDAAGVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEP KLVARKQMGLVAMVMLGLLSVMLYLTNKRLWAPYKGHKA D5ANZ4 Ubiquinol-cytochrome c reductase iron-sulfur subunit Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) ATCC BAA-309 / NBRC 16581 / SB1003 0.020465109 2 Rhodobacter capsulatus SB 1003 LEVO MSHAEDNAGTRRDFLYHATAATGVVVTGAAVWPLINQMNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEK DIELARSVPLGALRDTSAENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPMGDKSGDFGGWFCPCHGSHY DSAGRIRKGPAPRNLDIPVAAFVDETTIKLG D5ANZ2 7.1.1.8 HEME C 0.0006205189999999999 6 HEC FE2/S2 (INORGANIC) CLUSTER 0.00017581999999999998 2 FES singleParticle particle 4 7.4 C-flat-1.2/1.3 COPPER 400 GLOW DISCHARGE ETHANE 100 298 FEI VITROBOT MARK IV FEI TITAN KRIOS SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K3 (6k x 4k) 40.0 1 733210 RELION 3.0 CTFFIND 4.1 was used PHASE FLIPPING AND AMPLITUDE CORRECTION C2 3.75 FSC 0.143 CUT-OFF RELION 3.0 35069 MAXIMUM LIKELIHOOD RELION 3.0 MAXIMUM LIKELIHOOD RELION 3.0 emd_22224.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 240 240 240 0 0 0 240 240 240 326.4 326.4 326.4 90.0 90.0 90.0 X Y Z -0.110088654 0.19442655 0.00017753012 0.0035374751 1.36 1.36 1.36 0.04 AUTHOR CIII2-cc 1ZRT PDB experimental model FLEXIBLE FIT Correlation coefficient REAL 71.0