<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2222" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2012-10-17</deposition>
         <header_release>2012-11-21</header_release>
         <map_release>2013-01-09</map_release>
         <update>2013-02-27</update>
      </key_dates>
      <title>Structure of the PilF DNA transformation ATPase (AMPPNP bound form)</title>
      <authors_list>
         <author>Collins RF</author>
         <author>Hassan D</author>
         <author>Karuppiah V</author>
         <author>Thistlethwaite A</author>
         <author>Derrick JP</author>
      </authors_list>
      <keywords>ATPase, DNA transformation</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Collins RF</author>
               <author order="2">Hassan D</author>
               <author order="3">Karuppiah V</author>
               <author order="4">Thistlethwaite A</author>
               <author order="5">Derrick JP</author>
               <title>Structure and mechanism of the PilF DNA transformation ATPase from Thermus thermophilus.</title>
               <journal>BIOCHEM.J.</journal>
               <volume>450</volume>
               <first_page>417</first_page>
               <last_page>425</last_page>
               <year>2013</year>
               <external_references type="PUBMED">23252471</external_references>
               <external_references type="DOI">doi:10.1042/BJ20121599</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>PilF ATPase from Thermus thermophilus</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>PilF ATPase from Thermus thermophilus</name>
            <details>Monodisperse sample</details>
            <oligomeric_state>homohexamer</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">0.586</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>ATPase</name>
            <natural_source database="NCBI">
               <organism ncbi="274">Thermus thermophilus</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.586</theoretical>
            </molecular_weight>
            <number_of_copies>6</number_of_copies>
            <oligomeric_state>Hexamer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.2</concentration>
               <buffer>
                  <ph>6.5</ph>
                  <details>50mM Mes pH 6.5, 200mM NaCl and 10mM MgCl2</details>
               </buffer>
               <grid>
                  <details>Freshly glow discharged 2-2 Quantifoil grids</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">90</chamber_humidity>
                  <instrument>FEI VITROBOT MARK IV</instrument>
                  <method>continuously blotted for 4-5 seconds in a 90% humidity chamber before plunge freezing into liquid ethane at 22 degrees.</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI POLARA 300</microscope>
               <illumination_mode>SPOT SCAN</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">5.0</nominal_defocus_max>
               <calibrated_magnification>39000.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_average units="K">85</temperature_average>
               </temperature>
               <specialist_optics>
                  <energy_filter>
                     <name>FEI</name>
                  </energy_filter>
               </specialist_optics>
               <date>2011-11-01</date>
               <image_recording_list>
                  <image_recording>
                     <digitization_details>
                        <sampling_interval units="&#181;m">3.5</sampling_interval>
                     </digitization_details>
                     <number_real_images>97</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">20</average_electron_dose_per_image>
                     <details>Data were recorded on a Gatan 4Kx4K CCD</details>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Gatan MSC</specimen_holder>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Semi-automated picking as implemented within EMAN2</details>
            <ctf_correction>
               <details>EMAN2 - each particle</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C6</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">12.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>EMAN2</name>
                  </software>
               </software_list>
               <number_images_used>37000</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="8193">
      <file>emd_2222.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>128</col>
         <row>128</row>
         <sec>128</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>128</x>
         <y>128</y>
         <z>128</z>
      </spacing>
      <cell>
         <a units="&#8491;">384.0</a>
         <b units="&#8491;">384.0</b>
         <c units="&#8491;">384.0</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.36359513</minimum>
         <maximum>1.84904575</maximum>
         <average>0.03646536</average>
         <std>0.18055071</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">3</x>
         <y units="&#8491;">3</y>
         <z units="&#8491;">3</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.83</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>PilF DNA Transformation ATPase (apoprotein form)</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2222::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_2222.png</file>
         </figure>
      </figure_list>
   </interpretation>
</emd>