2023-11-29 REL RCSB RCSB RCSB 2020-06-17 2020-07-01 2020-07-01 2023-11-29 National Health and Medical Research Council (NHMRC, Australia) 1092262 Australia Australian Research Council (ARC) FL130100038 Australia Wellcome Trust 106077/Z/14/Z United Kingdom YSD1 major tail protein Hardy JM Dunstan R Bacteriophage tail, helical assembly, VIRAL PROTEIN Hardy JM Dunstan RA Grinter R Belousoff MJ Wang J Pickard D Venugopal H Dougan G Lithgow T Coulibaly F The architecture and stabilisation of flagellotropic tailed bacteriophages. Nat Commun UK 11 3748 3748 2020 32719311 doi:10.1038/s41467-020-17505-w 2041-1723 EMD-22182 other EM volume 6xgr FULLOVERLAP SASBDB SAS2352 associated SAS data
SAXS of monomeric recombinant YSD1_22
 Bacteriophage sp. Bacteriophage sp. 0 1
From environmental water samples taken during a phage survey of the waterways of Cambridge UK, the phage YSD1 was isolated using the attenuated S. enterica serovar Typhi BRD948. The virus was then amplified by infecting S. Typhimurium SL3261 delta-fljB.
Bacteriophage sp. YSD1 Salmonella enterica subsp. enterica serovar Typhi 56.3 YSD1 capsid 650.0 7 VIRION SUBSPECIES false false YSD1_22 major tail protein Bacteriophage sp. 0.04039136299999999 18 LEVO MNDNYQNNYVVGRGTVYFDRFQDGTNRKTGEMYFGNTPEFTINTDSETLDHYSSDHGMRVMDASVLLEASQGGTFTCDNI NADNLALWFLGEVSNTTQTQQTDAKEVFNPIMRGRYYQLGTTDDNPTGVRGVTNFQMVKADASIAISVGSGDITSIVGAT VVNPAGNYEIDLEAGRIYIEPDSTDLSGNVQIAVQYDVDAQKRTLVIGKSNMVYGALRMISDNPVGLNKNYYFPKVSIAP DGDYALKGDDWQVMSFTFKAMQLNNITQRVYIDIVEAAAAVDPTAQRTIEITPASTTATTGGAGVVCTVTVRDGTGTAVQ GDAVTFTTVAGATVTPNSATTGASGTATTTVNRTAAGTATVTATLANGKAATTGTITFSAP A0A498U5Z3 helical particle 7.5 100.0 NaCl Sodium chloride 8.0 MgSO4 Magnesium Sulfate 10.0 Tris-HCl Tris pH 7.5 Quantifoil R2/2 COPPER 300 GLOW DISCHARGE ETHANE 100 277 FEI VITROBOT MARK IV
The grid was blotted for 2 seconds with a blot force of -3 and no drain time..
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.5 2.5 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 QUANTUM (4k x 4k) SUPER-RESOLUTION 1-30 1 1881 12.0 27.24 1 41.2 19.7 C6 BACK PROJECTION 3.5 FSC 0.143 CUT-OFF RELION 2.1 147809 184501 Featureless cylinder NOT APPLICABLE RELION 2.1 emd_22183.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 343.04 343.04 343.04 90.0 90.0 90.0 X Y Z -0.19002108 0.33053997 0.00096707186 0.011539441 1.34 1.34 1.34 0.04 AUTHOR Sharpened masked map AB INITIO MODEL REAL emd_22183_msk_1.map emd_22183_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 343.04 343.04 343.04 90.0 90.0 90.0 X Y Z -0.19002108 0.33053997 0.0020759453 0.0136721665 1.34 1.34 1.34 AUTHOR Sharpened map emd_22183_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 337.92 337.92 337.92 90.0 90.0 90.0 X Y Z -0.011441369 0.043682966 0.0010379519 0.0033104597 1.32 1.32 1.32 AUTHOR Half map 2 emd_22183_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 337.92 337.92 337.92 90.0 90.0 90.0 X Y Z -0.012097488 0.044353288 0.0010379934 0.00332979 1.32 1.32 1.32 AUTHOR Half map 1