<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://ftp.ebi.ac.uk/pub/databases/em_ebi/emdb_related/emdb-schemas/emdb_schemas/v3/v3_0_11_0/emdb.xsd" version="3.0.11.0" emdb_id="EMD-22180">
    <admin>
        <current_status>
            <date>2025-05-21</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <revision_history>
            <revision version="1.0" date="2021-03-10">
                <change_list>
                    <image>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </image>
                    <primary_map>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </primary_map>
                </change_list>
            </revision>
            <revision version="1.1" date="2025-05-21">
                <change_list>
                    <metadata>
                        <revision_group>EXPERIMENTAL_SUMMARY</revision_group>
                        <categories>
                            <category>em_admin</category>
                            <category>em_software</category>
                        </categories>
                        <items>
                            <item>_em_admin.last_update</item>
                            <item>_em_software.name</item>
                        </items>
                    </metadata>
                </change_list>
            </revision>
            <revision version="1.2" date="2024-10-09">
                <change_list>
                    <model>
                        <revision_group>STRUCTURE_SUMMARY</revision_group>
                        <categories>
                            <category>chem_comp_atom</category>
                            <category>chem_comp_bond</category>
                            <category>database_2</category>
                            <category>em_admin</category>
                            <category>pdbx_entry_details</category>
                            <category>pdbx_modification_feature</category>
                        </categories>
                        <items>
                            <item>_database_2.pdbx_DOI</item>
                            <item>_database_2.pdbx_database_accession</item>
                            <item>_em_admin.last_update</item>
                            <item>_pdbx_entry_details.has_protein_modification</item>
                        </items>
                    </model>
                </change_list>
            </revision>
            <revision version="1.3" date="2025-05-21">
                <change_list>
                    <model>
                        <revision_group>DATA_COLLECTION</revision_group>
                        <categories>
                            <category>em_admin</category>
                            <category>em_software</category>
                        </categories>
                        <items>
                            <item>_em_admin.last_update</item>
                            <item>_em_software.name</item>
                        </items>
                    </model>
                </change_list>
            </revision>
        </revision_history>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2020-06-17</deposition>
            <header_release>2021-03-10</header_release>
            <map_release>2021-03-10</map_release>
            <update>2025-05-21</update>
        </key_dates>
        <title>CryoEM structure of influenza hemagglutinin A/Michigan/45/2015 in complex with cyno antibody 1C4</title>
        <authors_list>
            <author>Qiu Y</author>
            <author>Zhou Y</author>
        </authors_list>
        <keywords>influenza, hemagglutinin, antibody, vaccine, broadly neutralizing antibody, ANTIVIRAL PROTEIN</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Darricarrere N</author>
                    <author order="2">Qiu Y</author>
                    <author order="3">Kanekiyo M</author>
                    <author order="4">Creanga A</author>
                    <author order="5">Gillespie RA</author>
                    <author order="6">Moin SM</author>
                    <author order="7">Saleh J</author>
                    <author order="8">Sancho J</author>
                    <author order="9">Chou TH</author>
                    <author order="10">Zhou Y</author>
                    <author order="11">Zhang R</author>
                    <author order="12">Dai S</author>
                    <author order="13">Moody A</author>
                    <author order="14">Saunders KO</author>
                    <author order="15">Crank MC</author>
                    <author order="16">Mascola JR</author>
                    <author order="17">Graham BS</author>
                    <author order="18">Wei CJ</author>
                    <author order="19">Nabel GJ</author>
                    <title>Broad neutralization of H1 and H3 viruses by adjuvanted influenza HA stem vaccines in nonhuman primates.</title>
                    <journal_abbreviation>Sci Transl Med</journal_abbreviation>
                    <country>US</country>
                    <volume>13</volume>
                    <year>2021</year>
                    <external_references type="PUBMED">33658355</external_references>
                    <external_references type="DOI">doi:10.1126/scitranslmed.abe5449</external_references>
                    <external_references type="ISSN">1946-6242</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>6xgc</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>A/Michigan/45/2015(H1N1) hemagglutinin in complex with 1C4 Fab</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>A/Michigan/45/2015(H1N1) hemagglutinin in complex with 1C4 Fab</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>4</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <molecular_weight>
                    <theoretical units="kDa/nm">320</theoretical>
                </molecular_weight>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="2">
                <name>Hemagglutinin</name>
                <parent>1</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="1777792">Influenza A virus (A/Michigan/45/2015(H1N1))</organism>
                </natural_source>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="3">
                <name>1C4 Fab</name>
                <parent>1</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>4</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="9541">Macaca fascicularis</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Hemagglutinin HA1 chain</name>
                <natural_source database="NCBI">
                    <organism ncbi="1777792">Influenza A virus (A/Michigan/45/2015(H1N1))</organism>
                    <strain>A/Michigan/45/2015(H1N1)</strain>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.036432949</theoretical>
                </molecular_weight>
                <number_of_copies>3</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>DTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIV
ETSNSDNGTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPK
LNQSYINDKGKEVLVLWGIHHPSTTADQQSLYQNADAYVFVGTSRYSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKI
TFEATGNLVVPRYAFTMERNAGSGIIISDTPVHDCNTTCQTPEGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRN
VPSIQSR</string>
                    <external_references type="UNIPROTKB">A0A3Q8LWJ2</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>Hemagglutinin HA2 chain</name>
                <natural_source database="NCBI">
                    <organism ncbi="1777792">Influenza A virus (A/Michigan/45/2015(H1N1))</organism>
                    <strain>A/Michigan/45/2015(H1N1)</strain>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.025109901999999996</theoretical>
                </molecular_weight>
                <number_of_copies>3</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>GLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSVIEKMNTQFTAVGKEFNHLEKRIENL
NKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYP
KYSEEAKLNREKIDSGRLVPRGSPGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGHHHHHH</string>
                    <external_references type="UNIPROTKB">A0A482NTT4</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="3">
                <name>1C4 Fab heavy chain</name>
                <natural_source database="NCBI">
                    <organism ncbi="9541">Macaca fascicularis</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.025605572</theoretical>
                </molecular_weight>
                <number_of_copies>3</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>EVQLVESGGGLAKPGGSLRLSCAASGFTFSTYAMHWVRQAPGKGLEWISGINSGGGSTWYTASVKGRFTISRDNSKSTLS
LQMNSLRTEDTAVYYCAKDGGNAIFGLVITNYGLDSWGQGAVVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYF
PEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGGSKPPTHH
HHHH</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="4">
                <name>1C4 Fab light chain</name>
                <natural_source database="NCBI">
                    <organism ncbi="9541">Macaca fascicularis</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.022837086</theoretical>
                </molecular_weight>
                <number_of_copies>3</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>QSVLTQPPSASGAPGQSVTISCSGSSSNFGSNHVYWYQQLSGKAPKLLIYNNNRRPSGVPDRFSGSKSGTSASLAISGLQ
SEDEADYYCSVWDSSLNNVLFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGVVKVAWKADGNSVN
TGVETTTPSKQSNNKYAASSYLSLTSDQWKSHKSYSCQVTHEGSTVEKTVAPAECS</string>
                </sequence>
            </protein_or_peptide>
            <ligand macromolecule_id="6">
                <name>2-acetamido-2-deoxy-beta-D-glucopyranose</name>
                <molecular_weight>
                    <theoretical units="MDa">0.000221208</theoretical>
                </molecular_weight>
                <number_of_copies>15</number_of_copies>
                <formula>NAG</formula>
            </ligand>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>8.5</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>SUPER-RESOLUTION</detector_mode>
                            <average_electron_dose_per_image units="e/Å^2">50.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <type>PHASE FLIPPING AND AMPLITUDE CORRECTION</type>
                </ctf_correction>
                <startup_model type_of_model="INSILICO MODEL"/>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">4.1</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>449762</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>COMMON LINE</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="108001">
        <file>emd_22180.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>300</col>
            <row>300</row>
            <sec>300</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>300</x>
            <y>300</y>
            <z>300</z>
        </spacing>
        <cell>
            <a units="Å">317.7</a>
            <b units="Å">317.7</b>
            <c units="Å">317.7</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.06848428</minimum>
            <maximum>0.11415439</maximum>
            <average>0.00019993474</average>
            <std>0.002521548</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.059</x>
            <y units="Å">1.059</y>
            <z units="Å">1.059</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.02</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-22180::::</label>
    </map>
</emd>
