Molecular structure of the core of amyloid-like fibrils formed by residues 111-214 of FUS

2024-03-06 REL RCSB RCSB RCSB 2020-06-15 2020-10-07 2020-10-07 2024-03-06 Molecular structure of the core of amyloid-like fibrils formed by residues 111-214 of FUS Tycko R Lee M Low complexity domain, Protein aggregation, Amyloid Fibril, RNA BINDING PROTEIN, PROTEIN FIBRIL Lee M Ghosh U Thurber KR Kato M Tycko R Molecular structure and interactions within amyloid-like fibrils formed by a low-complexity protein sequence from FUS. Nat Commun UK 11 5735 5735 2020 33184287 doi:10.1038/s41467-020-19512-3 2041-1723 6xfm FULLOVERLAP FUS low complexity sequence FUS low complexity sequence 0 1

C-terminal domain of FUS low complexity domain (111-214)

Homo sapiens 40.4 RNA-binding protein FUS Homo sapiens 0.010024783999999998 8 Escherichia coli BL21(DE3) LEVO GSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGS GGGYGNQDQSGGGGSGGYGQGDRG P35637 singleParticle helicalArray 0.4 7.4 20.0 C4H11NO3 Tris HCl

20 mM 2-mercaptoethanol, 0.1 mM PMSF

Quantifoil R2/2 COPPER 300 CARBON HOLEY 12.0 GLOW DISCHARGE 60 0.039

The grid was glow discharged immediately before use.

ETHANE 99 93 LEICA PLUNGER

Preblot for 10 seconds and blot for 5 seconds before plunging.

FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 2.5 130000.0 NITROGEN GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 3800 3700 2 2404 6.0 47.0

58185 fibril segments were manually selected from 2404 micrographs

Gatan Imaging Filter (GIF) Quantum LS

499206

499206 of particles were extracted from the 58185 fibril segments using a 400-pixel box size and 91.6% overlap.

featureless cylinder

1 C1 FOURIER SPACE 2.62 FSC 0.143 CUT-OFF RELION 3.0

3D refinement and post-processing were performed with 21 (screw) symmetry

275520 ANGULAR RECONSTITUTION RELION 3.0

4.8-Angstrom helical rise and -2.0 degree helical twist

ANGULAR RECONSTITUTION RELION 3.0 3 RELION 3.0

The major class which contains 69% of the particles was selected for further refinement

emd_22169.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 429.6 429.6 429.6 90.0 90.0 90.0 X Y Z -0.10251353 0.19740163 0.00006598027 0.0028924437 1.074 1.074 1.074 0.02 AUTHOR ::::EMDATABANK.org::::EMD-22169:::: OTHER

Manually generated model was fit into the density using PHENIX and UCSF Chimera. Further refinements were performed using Xplor-NIH.