2024-11-20 REL RCSB RCSB RCSB 2020-06-14 2020-07-22 2020-07-22 2024-11-20 Other private Jack Ma Foundation China Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-4 Rapp M Shapiro L spike, glycoprotein, antibody, VIRAL PROTEIN, VIRAL PROTEIN-Immune System complex Liu L Wang P Nair MS Yu J Rapp M Wang Q Luo Y Chan JF Sahi V Figueroa A Guo XV Cerutti G Bimela J Gorman J Zhou T Chen Z Yuen KY Kwong PD Sodroski JG Yin MT Sheng Z Huang Y Shapiro L Ho DD Potent neutralizing antibodies against multiple epitopes on SARS-CoV-2 spike. Nature UK 584 450 456 2020 32698192 doi:10.1038/s41586-020-2571-7 1476-4687 0006 NATUAS Liu L Wang P Nair MS Yu J Huang Y Rapp MA Wang Q Luo Y Sahi V Figueroa A Guo XV Cerutti G Bimela J Gorman J Zhou T Kwong PD Sodroski JG Yin MT Sheng Z Shapiro L Ho DD Potent Neutralizing Monoclonal Antibodies Directed to Multiple Epitopes on the SARS-CoV-2 Spike. Biorxiv US 2020 32587975 doi:10.1101/2020.06.17.153486 2692-8205 6xey FULLOVERLAP SARS-CoV-2 spike glycoprotein bound to Fab 2-4 SARS-CoV-2 spike glycoprotein bound to Fab 2-4 0 1 2 3 Severe acute respiratory syndrome coronavirus 2 515.96 Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 0.142399375 3 Homo sapiens LEVO MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN TLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL QELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSA WSHPQFEK P0DTC2 2-4 Heavy Chain Homo sapiens 0.013711394 3 Homo sapiens LEVO QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYTQMFQGRVTMTRDTSISTAY MEVSRLRSDDTAVYYCARDRSWAVVYYYMDVWGKGTTVTVSS 2-4 Light Chain Homo sapiens 0.011400429 3 Homo sapiens LEVO QSALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSKRPSGVPDRFSGSKSGNTASLTVSGL QAEDEADYYCSSYAGSNNLVFGGGTKLTVL A0A5C2GJG2 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 36 NAG singleParticle particle 5.5 ETHANE 95 266 LEICA EM GP FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 81000.0 GATAN K3 BIOQUANTUM (6k x 4k) 1 3576 51.3 1 3.25 FSC 0.143 CUT-OFF 83927 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_22156.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 406.27197 406.27197 406.27197 90.0 90.0 90.0 X Y Z -0.046700098 1.3106683 0.0078038853 0.02584703 1.058 1.058 1.058 0.22 AUTHOR Sharpened map emd_22156_msk_1.map emd_22156_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 406.27197 406.27197 406.27197 90.0 90.0 90.0 X Y Z -0.20122768 0.6995206 -0.000054906362 0.017783746 1.058 1.058 1.058 AUTHOR Unsharpened local refinement of the S2P trimer, excluding the RBD and Fab variable region emd_22156_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 406.27197 406.27197 406.27197 90.0 90.0 90.0 X Y Z -0.18265292 1.1196108 -0.00007211662 0.014755525 1.058 1.058 1.058 AUTHOR Unsharpened local refinement of the S2P trimer RBD and Fab variable region emd_22156_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 406.27197 406.27197 406.27197 90.0 90.0 90.0 X Y Z -0.041237503 1.0026078 0.0032201463 0.019145606 1.058 1.058 1.058 AUTHOR Unsharpened consensus map of two separate local refinements emd_22156_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 406.27197 406.27197 406.27197 90.0 90.0 90.0 X Y Z -0.1421263 1.4609472 0.055079523 0.047851004 1.058 1.058 1.058 AUTHOR Unmasked consensus half map B used in the calculation of the FSC emd_22156_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 406.27197 406.27197 406.27197 90.0 90.0 90.0 X Y Z -0.16769037 1.4040275 0.06411364 0.053401172 1.058 1.058 1.058 AUTHOR Unmasked consensus half map A used in the calculation of the FSC