2021-04-14 REL RCSB RCSB RCSB 2020-05-22 2021-03-03 2021-03-03 2021-04-14 Howard Hughes Medical Institute (HHMI) United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) F32GM097888 United States Asterix/Gtsf1 from mouse (full-length protein) bound to co-purifying tRNA Ipsaro JJ Joshua-Tor L Ipsaro JJ O'Brien PA Bhattacharya S Joshua-Tor L Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons. Cell Rep US 34 108914 108914 2021 33789107 doi:10.1016/j.celrep.2021.108914 2211-1247 EMD-22040 associated EM volume Complex of Asterix/Gtsf1 from mouse (full-length protein) bound to co-purifying tRNA Complex of Asterix/Gtsf1 from mouse (full-length protein) bound to co-purifying tRNA 0 1 2
Co-purifying RNA in this sample was derived from the expression host (Sf9) and represents a heterogenous population. For more details on the identities of these nucleic acids, please see the original publication.
0.045 Gametocyte-specific factor 1 1 1 Mus musculus tRNA (heterogeneous population) 1 2 Spodoptera frugiperda Gametocyte-specific factor 1 Mus musculus Spodoptera frugiperda LEVO MEDTYIDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVANKLATCPFNARHQVPRAEISHHISSCDDKSCIEQDVVNQTRNLGQETLAESTWQCPPCDEDWDKDLWEQTSTPFVWGTASFCGNNSPANNIVMEHKSNLASGMRVPKSLPYVLPWKNNGNAQENLYFQGASAWSHPQFEKGGGSGGGSGGSAWSHPQFEK tRNA Spodoptera frugiperda ovary
The sequence above represents the most abundant RNA as assessed by next-generation sequencing. This sequence made up approximately 15% of the sequencing library, with additional sequences only 1 nucleotide different making up approximately 10% more of the library.
TCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGCCGGAGAGCCA singleParticle particle 0.25 8.0 50.0 C4H11NO3 Tris 100.0 KCl potassium chloride 5.0 C10H18N2O3 d-desthiobiotin Homemade COPPER 300 CARBON LACEY GLOW DISCHARGE AIR 4.0
Grids were purchased from Electron Microscopy Sciences. Lacey carbon film, 300 mesh.
 ETHANE 95 298 LEICA EM GP
Blotted for 2.5 seconds before plunging..
Monodisperse complex with an apparent stoichometry of 1:1 protein:RNA based on gel filtration.
 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2.7 1.0 3.0 215000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 20 GATAN K2 SUMMIT (4k x 4k) COUNTING 1 4849 4.0 76.4 1 495299 Warp 1.0.6 C1 9.8 FSC 0.5 CUT-OFF cisTEM 1.0.0
The resolution estimate by FSC is likely higher than the actual model. Visual inspection of the map suggests a resolution closer to 15-20 Angstroms.
346643 RANDOM ASSIGNMENT cisTEM 1.0.0-beta MAXIMUM LIKELIHOOD cisTEM 1.0.0-beta 17 cisTEM 1.0.0-beta emd_22040.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 187.86 187.86 187.86 90.0 90.0 90.0 X Y Z 0.017668411 1.5232673 0.04056054 0.08181212 0.6262 0.6262 0.6262 0.3 AUTHOR Asterix/Gtsf1 from mouse (full-length protein) bound to co-purifying tRNA