2021-01-27 REL RCSB RCSB RCSB 2020-05-10 2021-01-27 2021-01-27 2021-01-27 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01 GM57479 United States Natural Sciences and Engineering Research Council (NSERC, Canada) RGPIN-2015-05776 Canada The negative stain EM structure of the human DNA LigI-PCNA-DNA complex Sverzhinsky A Pascal JM Matsumoto Y Brooks RC Sverzhinsky A Pascal JM Tomkinson AE Dynamic DNA-bound PCNA complexes co-ordinate Okazaki fragment synthesis, processing and ligation. J.Mol.Biol. UK 432 166698 166698 2020 33157085 doi:10.1016/j.jmb.2020.10.032 1089-8638 0070 JMOBAK EMD-21958 associated EM volume Full-length DNA LigI in complex with nicked duplex DNA and PCNA Full-length DNA LigI in complex with nicked duplex DNA and PCNA 0 1 2 3 0.22 DNA ligase I 1 1 Homo sapiens Escherichia coli BL21(DE3) Rosetta2 Proliferating Cell Nuclear Antigen 1 2 Homo sapiens Escherichia coli BL21(DE3) BL21(DE3) Rosetta2 Nicked DNA duplex 1 3 Homo sapiens synthetic DNA ligase I Homo sapiens Escherichia coli BL21(DE3) LEVO MGSSHHHHHHSSGLVPRGSHMtRSIMSFFHPKKEGKAKKPEKEASNSSRETEPPPKAALK EWNGVVSESDSPVKRPGRKAARVLGSEGEEEDEALSPAKGQKPALDCSQVSPPRPATSPE NNASLSDTSPMDSSPSGIPKRRTARKQLPKRTIQEVLEEQSEDEDREAKRKKEEEEEETP KESLTEAEVATEKEGEDGDQPTTPPKPLKTSKAETPTESVSEPEVATKQELQEEEEQTKP PRRAPKTLSSFFTPRKPAVKKEVKEEEPGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDAC WKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGP PQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLT ASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVL AALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVL LEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALE GGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTT RKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLD TKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLV VIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSP RPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVRE DKQPEQATTSAQVACLYRKQSQIQNQQGEDSGSDPEDTY 6.5.1.1 Proliferating Cell Nuclear Antigen Homo sapiens Escherichia coli BL21(DE3) LEVO MGHHHHHHHHHHSSGHIDDDDKHTSLEVVFQGPHMFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMD LDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNI KLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYK IADMGHLKYYLAPKIEDEEGS Nicked DNA duplex Homo sapiens GGTTCAGTCCGACGACGCATCAGCACAGAAGC DNA singleParticle particle 0.01 8.0 NEGATIVE Uranyl Formate COPPER 300 GLOW DISCHARGE AIR FEI TECNAI 12 FLOOD BEAM BRIGHT FIELD LAB6 120 67000.0 FEI EAGLE (4k x 4k) 1.0 70.0 1 228451
SGD
 C1 19.0 FSC 0.5 CUT-OFF RELION 2.1 49504 MAXIMUM LIKELIHOOD RELION MAXIMUM LIKELIHOOD RELION emd_21958.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 64 64 64 0 0 0 64 64 64 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.06672185 0.12201776 0.0012391106 0.012408545 3.28 3.28 3.28 0.023 AUTHOR Refined 3D map of full-length human DNA LigI with human PCNA and 32bp non-ligatable nicked DNA.