Downsampled and filtered tomogram of a region from a cryoFIB-SEM-generated lamellae of yeast cells under heat shock stress showing large protein aggregates

2020-12-02 REL RCSB RCSB RCSB 2020-05-10 2020-09-02 2020-09-02 2020-12-02 National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS) P01NS092525 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) 5P41GM103832 United States National Institutes of Health/National Institute on Aging (NIH/NIA) PO1AG054407 United States National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS) F32NS086253 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) S10OD021600 United States Department of Energy (DOE, United States) BERFWP 100463 United States Downsampled and filtered tomogram of a region from a cryoFIB-SEM-generated lamellae of yeast cells under heat shock stress showing large protein aggregates Wu GH Mitchell PG Galaz-Montoya JG Hecksel CW Sontag EM Gangadharan V Marshman J Mankus D Bisher ME Lytton-Jean AKR Frydman J Czymmek K Chiu W Wu GH Mitchell PG Galaz-Montoya JG Hecksel CW Sontag EM Gangadharan V Marshman J Mankus D Bisher ME Lytton-Jean AKR Frydman J Czymmek K Chiu W Multi-scale 3D Cryo-Correlative Microscopy for Vitrified Cells. Structure UK 28 1231 1237.e3 2020 32814034 doi:10.1016/j.str.2020.07.017 0969-2126 2005 STRUE6 EMD-21952 other EM volume

Ribosome subtomogram average

EMD-21953 associated EM volume Downsamples and filtered tomogram of a region from a cryoFIB-SEM-generated lamellae of yeast cells under heat shock stress showing large protein aggregates Downsamples and filtered tomogram of a region from a cryoFIB-SEM-generated lamellae of yeast cells under heat shock stress showing large protein aggregates 0 Saccharomyces cerevisiae BY4741 tomography cell 7 ETHANE

OTHER OTHER 30 20 60 100 1000 520

The value given for _emd_sectioning_focused_ion_beam.instrument is Zeiss Crossbeam 540 FIB-SEM. This is not in a list of allowed values set(['DB235', 'OTHER']) so OTHER is written into the XML file.

TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) COUNTING 0.8264 1 SIMULTANEOUS ITERATIVE (SIRT) IMOD

The SIRT, downsampled, and filtered tomogram was computed for visualization only. The related EMDB entry showcasing a ribosome subtomogram average used similar tomograms but reconstructed with weighted-back-projection, at full-size, and unfiltered.

121 IMOD

3D CTF correction

emd_21953.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 479 463 206 0 0 -103 479 463 206 13251.054 12808.43 5698.783 90.0 90.0 90.0 X Y Z -2.9999998 2.9999998 -0.00015260548 0.9856359 27.663996 27.663996 27.663996 AUTHOR ::::EMDATABANK.org::::EMD-21953:::: Binned-by-8 and filtered tomogram of a region from a cryoFIB-SEM-generated lamellae of yeast cells under heat shock stress showing large protein aggregates.