2024-03-06 REL RCSB RCSB RCSB 2020-05-04 2020-11-04 2020-11-04 2024-03-06 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM094157 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) G12MD007603 United States 30S subunit (head) of 70S Ribosome Enterococcus faecalis MultiBody refinement Jogl G Khayat R 70S, ribosome, pathogen, antibiotic development, antibiotic resistant Murphy EL Singh KV Avila B Kleffmann T Gregory ST Murray BE Krause KL Khayat R Jogl G Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis. Sci Rep UK 10 16301 16301 2020 33004869 doi:10.1038/s41598-020-73199-6 2045-2322 EMD-0656 other EM volume EMD-0657 other EM volume EMD-0658 other EM volume EMD-0659 other EM volume EMD-0660 other EM volume 6wua FULLOVERLAP Enterococcus faecalis Enterococcus faecalis 0 1 2 3 4 5 6 7 8 Enterococcus faecalis OG1RF 2.5 16S rRNA Enterococcus faecalis OG1RF 0.501090781 1 UGAGAGUUUGAUCCUGGCUCAGGACGAACGCUGGCGGCGUGCCUAAUACAUGCAAGUCGAACGCUUCUUUCCUCCCGAGU GCUUGCACUCAAUUGGAAAGAGGAGUGGCGGACGGGUGAGUAACACGUGGGUAACCUACCCAUCAGAGGGGGAUAACACU UGGAAACAGGUGCUAAUACCGCAUAACAGUUUAUGCCGCAUGGCAUAAGAGUGAAAGGCGCUUUCGGGUGUCGCUGAUGG AUGGACCCGCGGUGCAUUAGCUAGUUGGUGAGGUAACGGCUCACCAAGGCCACGAUGCAUAGCCGACCUGAGAGGGUGAU CGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCGGCAAUGGACGAAAGUCU GACCGAGCAACGCCGCGUGAGUGAAGAAGGUUUUCGGAUCGUAAAACUCUGUUGUUAGAGAAGAACAAGGACGUUAGUAA CUGAACGUCCCCUGACGGUAUCUAACCAGAAAGCCACGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAA GCGUUGUCCGGAUUUAUUGGGCGUAAAGCGAGCGCAGGCGGUUUCUUAAGUCUGAUGUGAAAGCCCCCGGCUCAACCGGG GAGGGUCAUUGGAAACUGGGAGACUUGAGUGCAGAAGAGGAGAGUGGAAUUCCAUGUGUAGCGGUGAAAUGCGUAGAUAU AUGGAGGAACACCAGUGGCGAAGGCGGCUCUCUGGUCUGUAACUGACGCUGAGGCUCGAAAGCGUGGGGAGCAAACAGGA UUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAGUGCUAAGUGUUGGAGGGUUUCCGCCCUUCAGUGCUGCAGCAAAC GCAUUAAGCACUCCGCCUGGGGAGUACGACCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGA GCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGUCUUGACAUCCUUUGACCACUCUAGAGAUAGAGCUUUC CCUUCGGGGACAAAGUGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAG CGCAACCCUUAUUGUUAGUUGCCAUCAUUUAGUUGGGCACUCUAGCGAGACUGCCGGUGACAAACCGGAGGAAGGUGGGG AUGACGUCAAAUCAUCAUGCCCCUUAUGACCUGGGCUACACACGUGCUACAAUGGGAAGUACAACGAGUCGCUAGACCGC GAGGUCAUGCAAAUCUCUUAAAGCUUCUCUCAGUUCGGAUUGCAGGCUGCAACUCGCCUGCAUGAAGCCGGAAUCGCUAG UAAUCGCGGAUCAGCACGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCACGAGAGUUUGUAAC ACCCGAAGUCGGUGAGGUAACCUUUUUGGAGCCAGCCGCCUAAGGUGGGAUAGAUGAUUGGGGUGAAGUCGUAACAAGGU AGCCGUAUCGGAAGGUGCGGCUGGAUCA CP002621.1 30S ribosomal protein S3 Enterococcus faecalis OG1RF 0.022884309 1 LEVO GQKVHPIGMRVGIIRDWDAKWYAEKEYAEFLHEDLRIRKFIATKLADAAVSTIEIERAANRVNISIHTAKPGMVIGKGGS EVENLRKELNKLTGKRVHINIVEIKKPDLDAKLVGEGIARQLENRVAFRRAQKQAIQRAMRAGAKGIKTQVSGRLNGADI ARSEGYSEGTVPLHTLRADIDYAWEEADTTYGKLGVKVWIYRGE A0A1B4XKR8 30S ribosomal protein S7 Enterococcus faecalis OG1RF 0.017547219 1 LEVO PRKGPVAKRDVLPDPIYNSKLVTRLINRVMVDGKRGIAANIIYNSFDIIKESTGNDPLEVFEQAMKNVMPVLEVKARRVG GSNYQVPVEVRPERRTTLGLRWVVNYARLRGEHTMEERLAKEIMDAANNTGASVKKREDTHKMADANRAFAHYR A0A1B4XKQ3 30S ribosomal protein S9 Enterococcus faecalis OG1RF 0.014069205999999999 1 LEVO QVQYSGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLREVINQPFGVTETKGAYDVIVNVNGGGYAGQSGAIRHG IARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR A0A1B4XSA2 30S ribosomal protein S10 Enterococcus faecalis OG1RF 0.011400285999999999 1 LEVO QKIRIRLKAYEHRILDQSADKIVETAKRTGADVSGPIPLPTERSLYTVIRATHKYKDSREQFEMRTHKRLIDIVNPTPKT VDALMKLDLPSGVNIEIKL A0A1B4XKR5 30S ribosomal protein S13 Enterococcus faecalis OG1RF 0.012619492 1 LEVO ARIAGVDIPRDKRVVVSLTYIYGIGNTTAKKVLANVGVSEDVRVRDLTNEQTDAIRAEIDKLKVEGDLRREVNLNIKRLM EIGSYRGIRHRRGLPTRGQNTKNNARTRKGPT A0A1B4XKT7 30S ribosomal protein S14 type Z Enterococcus faecalis OG1RF 0.007041397 1 LEVO AKKSMIAKNKRPAKHSTQAYTRCERCGRPHSVYRKFHLCRICFRELAYKGQIPGVKKASW A0A1B4XKT0 30S ribosomal protein S19 Enterococcus faecalis OG1RF 0.008999470999999998 1 LEVO SLKKGPFVDDHLMKKVEAQQGAEKKKVIKTWSRRSTIFPSFVGFTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYR A0A1B4XKS0 ZINC ION 6.5409e-05 1 ZN singleParticle particle 1.5 7.5 ETHANE 100 277 FEI VITROBOT MARK IV
Vol = 4 uL, BT = 4 sec, BF = 0, DT = 0, WT = 8 sec.
Sample was monodisperse.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 QUANTUM (4k x 4k) COUNTING 25.0 1
Ab initio
 C1 3.2 FSC 0.143 CUT-OFF cryoSPARC 0.63 335675 COMMON LINE RELION 3.1 MAXIMUM LIKELIHOOD cryoSPARC 0.63 emd_21908.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 440 440 440 0 0 0 440 440 440 482.68 482.68 482.68 90.0 90.0 90.0 X Y Z -0.03963051 0.116611235 -0.0009723742 0.003378916 1.097 1.097 1.097 0.035 AUTHOR 30S subunit (head) of 70S Ribosome Enterococcus faecalis MultiBody refinement 5LI0 PDB experimental model 4YBB PDB experimental model FLEXIBLE FIT Correlation Coefficient REAL 177.0