2024-03-06 REL RCSB RCSB RCSB 2020-04-21 2020-11-11 2020-11-11 2024-03-06 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R35GM130290 United States Travis BA Brennan RG RNA polymerase complex, TRANSCRIPTION Travis BA Ramsey KM Prezioso SM Tallo T Wandzilak JM Hsu A Borgnia M Bartesaghi A Dove SL Brennan RG Schumacher MA Mol.Cell US 81 139 2021 33217319 doi:10.1016/j.molcel.2020.10.035 1097-2765 2168 MOCEFL 6wmt FULLOVERLAP Francisella RNAPs70-(MglA-SspA)-ppGpp-PigR-iglA DNA complex Francisella RNAPs70-(MglA-SspA)-ppGpp-PigR-iglA DNA complex 0 1 2 3 4 5 6 7 8 9 10 11 12 13 Francisella tularensis subsp. holarctica LVS DNA-directed RNA polymerase subunit omega Francisella tularensis subsp. holarctica (strain LVS) LVS 0.008184332999999998 1 LEVO MARVTVEDCLDKVETRFDLVVLASMRANKILKNGYSESMENEKKEKATVVALREIAESEITSEQILRNEIEG Q2A273 2.7.7.6 DNA-directed RNA polymerase subunit alpha 1 Francisella tularensis subsp. holarctica (strain LVS) LVS 0.035393387 1 LEVO MSNNNSKLEFVPNIQLKEDLGAFSYKVQLSPVEKGMAHILGNSIRRVLLSSLSGASIIKVNIANVLHEYSTLEDVKEDVV EIVSNLKKVAIKLDTGIDRLDLELSVNKSGVVSAGDFKTTQGVEIINKDQPIATLTNQRAFSLTATVSVGRNVGILSAIP TELERVGDIAVDADFNPIKRVAFEVFDNGDSETLEVFVKTNGTIEPLAAVTKALEYFCEQISVFVSLRVPSNGKTGDVLI DSNIDPILLKPIDDLELTVRSSNCLRAENIKYLGDLVQYSESQLMKIPNLGKKSLNEIKQILIDNNLSLGVQIDNFRELV EGK Q2A5E5 2.7.7.6 DNA-directed RNA polymerase subunit alpha 2 Francisella tularensis subsp. holarctica (strain LVS) LVS 0.035113031 1 LEVO MALENLLHPTNIKIDEYAKNATKFSFEALERGVGYTLGFALKQTMLYSIAGACVTSIKINDGKVTSLEDVIPCDETVADI ILNVKSLSVTLAEDVETGTITFELSGSEEEIFSEEAKLSEGLAITEEVFICSYNGGKKLKIEAKVEKGVGFRPAQDNFKD GEFLLDATFSPVVFCDFEIKDARVGRRTDLDKLELNIKTNGNVNCEEALRLAATKIQNQLRNIVDIEEINKGIFVEDPKD INPILLKHVEELNLTARSSNCLKAVNIRLIGELVQKTENELLKAPNFGKKSLTEIKDKLSELGLSLGTLIENWPQDL Q2A4H7 2.7.7.6 DNA-directed RNA polymerase subunit beta Francisella tularensis subsp. holarctica (strain LVS) LVS 0.15153614099999999 1 LEVO MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTVDAAKGRLHSGLEIVLKQSFPVESKNGQYELHYVDYQIGE PTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIVEDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGA FFSKDDSEEGAFSARIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSESKTITFNSKGFALR LDNLSNMKGELLKFDIVDAQDNVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDLVSTLRVAKDIVNEATGEVIAYANDDVT ESLLKSCVEVGMLELEVIDFITTERGRYISDTLKYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLS DIGRMKLNARLGSDKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRE SMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGGLSRDRAGFEVRDVHATHYGR LCPIETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVDGKVTDEIEYLSAIDEDNYVIAQASTKLDENNHFVEDIIQCR SGGEAIFTESSRVQYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCII ARNVGEVAEVDSNRIVIKVDTEKSQTSNLVDIYSLTKFKRSNKNTCINQRPIVNVGDKVEAGDILADGFATDFGELSLGH NLMVAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVE AGDILVAKITPKAEQQLTPEERLLRAIFNEKASNVVDSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARK DFDEEFAVIESVVKSSIEQEVVGAKIQKAKGLKKGAILTKEFLATLPLSKWLEISFEDEKLEEKVQNAREYYEEAKIAID AKFEAKKKSITQSNELSPGVLKTVKVFVAIKKRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSR MNIGQILEAHLGLASYGLGKKIEKTLEKTRKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCDNLKGGVPIATPVFD GAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ RFGEMEVWALQAYGAAYTLREMLTVKSDDIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE Q2A1M7 2.7.7.6 DNA-directed RNA polymerase subunit beta' Francisella tularensis subsp. holarctica LVS LVS 0.17844549999999998 1 LEVO MNNGILHQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRG VVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPSRIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTD EEYAEALENYGYEFEASMGAEAIRDLLADTDIESEIELLQAECEESKSTAKKEKAIKRLRLLETFQASGNKPEWMVMTVL PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQEAVDALLDNGRRGRAVTGSNKR PLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLRLHECGLPKKMALELFKPFVYSKLRLGGHATTIKQAKRMVE LEEAVVWDILETVINEHPVLLNRAPTLHRLGIQAFEPRLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARV LMMSTNNILSPASGQPIITPTQDIVLGLYYITREKEGARGEGKLFSSYEDVSRAYNSGTIDIHAKIKLRIDRQVFDTKGN TYNEKGVVNTTVGRALLLNILPEGLSFSLLNKVLVKKEISKIINQAFRVLGGKATVVLADKLMYAGFKYSTLSGVSVGVD DMTIPDNKEAKIEEAEKEIKQITEQYQSSLITENERYNNIINIWSKTSDEVGASMMDAISKDTVSINGEKKEIESFNSVY MMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGLADTALKTANAGYLTRRLVDV AQDLVVIEEDCGTDDGLMFSAIVEDGEVKVPLVERALGRTLAADVVTEKGVVLLEAGTLLDENLVELLDDNGIDMIKVRS PITCKTRRGLCAKCYGRDLARERQVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGITVSDIKVKTAGKIKFKNIR TVTNKEGQEIVISRAGEIIVSDTMGRVREQHKIPMGAVVPLASGKAVEIGDVIATWDPHAQPLITDVAGKVVLEDVIDGI TSKHTYDDLTGQQTIEITSISQRTTSKNLKPVVKIVDEKGAELKSIPLAVGAVLNVADDSILEVGDIVAKIPLEGSKNKD ITGGLPRVAELFEARRPKDAAILSPCDGMVRLGNRDTKEKQRIEIIDKNGHIVEEILLPKSRHLVVFDGEQVSRGDVLAD GPTDPHDLLKYKGLEEFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKAVILDEGDSKFVKDESIELVRILEENDKL RKQGKKEVEYELVLMGITRSSLSTESFLSAASFQETTRVLTEASINSQIDNLRGLKENVLIGRLIPAGTGLAVRKESAKI EKMREELGVEDNMVFTDLSSFNPEEISFDSIQSQKEDKDINEDIEESLRNALESLDFAAASMEKRRWKKNFIAVSAANRF KKISSSGALDYDIPTTASENLYFQGELKTAALAQHDEAVDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSA NLLAEAKKLNDAQAPKVDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNGAQAPKVDANSA GKST 2.7.7.6 DNA NT-strand Francisella tularensis subsp. holarctica LVS 0.016074335999999998 1 (DA)(DT)(DT)(DT)(DA)(DG)(DC)(DT)(DG)(DT)(DA)(DT)(DA)(DA)(DA)(DC)(DA)(DT)(DT)(DG) (DT)(DG)(DT)(DT)(DA)(DT)(DT)(DG)(DG)(DC)(DG)(DT)(DT)(DA)(DT)(DT)(DA)(DA)(DG)(DG) (DT)(DA)(DA)(DC)(DT)(DT)(DG)(DC)(DT)(DT)(DA)(DT) AM233362.1 DNA DNA T-strand Francisella tularensis subsp. holarctica LVS 0.012833329999999999 1 (DT)(DA)(DC)(DC)(DT)(DT)(DA)(DA)(DT)(DA)(DA)(DC)(DG)(DC)(DC)(DA)(DA)(DT)(DA)(DA) (DC)(DA)(DC)(DA)(DA)(DT)(DG)(DT)(DT)(DT)(DA)(DT)(DA)(DC)(DA)(DG)(DC)(DT)(DA)(DA) (DA)(DT) DNA DNA T-strand downstream Francisella tularensis subsp. holarctica LVS 0.0033591989999999998 1 (DG)(DC)(DC)(DG)(DC)(DG)(DT)(DC)(DA)(DG)(DA) DNA aCTDs Francisella tularensis subsp. holarctica LVS 0.006230672 2 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) Macrophage growth locus, subunit A Francisella tularensis subsp. holarctica LVS 0.023650656 1 LEVO MLLYTKKDDIYSDIVRMILLIKGANAKIVDVSKEENSKHLEELNIITPNGNIPTLSTDDFAVYRLSVIIEAIEDLYPFPP MFPVFPKQRANARILLEYVNKTFLQNIIKLQSPDLDEKQANEIKMLMQRDIISTYKKIVSEREVNAESNPDAQNINVLTL IITFVFYYFIKLKISIPTKDKNIIKEIKELLSEPNFIKTIKAKGA A0A0B6CT24 Glutathione S-transferase Francisella tularensis subsp. holarctica LVS 0.024098213 1 LEVO MMKVTLYTTKYCPYSLRARIALAEKKMSTDIVEAGDLEPAMIKKITPNGVFPVLMEKDYSINNRKALLIYIDERFPAPSL LPNVVNERIKIRLSLDKIDNEWYPVLDQIRKHRSDQKMLESMFKDLKESLLAMEKAFTGSEFFISSGFTLADCYIAALII CLEAEGFIIDDEYGAIYEYKKRLFARDSVKKANIKGGAGESLLKTLRTHR A0A5Q3U6R7 DNA NT-strand downstream Francisella tularensis subsp. holarctica LVS 0.003350185 1 (DT)(DC)(DT)(DG)(DA)(DC)(DG)(DC)(DG)(DG)(DC) DNA RNA polymerase sigma factor RpoD Francisella tularensis subsp. holarctica LVS 0.06774846899999999 1 LEVO MTKEDLLSDLKDLMIDGRERGYLTRADILDALPGDVSEDPKIYEEIEAILIDAGIDVYDRTPQIEEDDERKVSEANLDDL KGKTSDPIRMYMREMGIVDLLDKKGETDIAIRIEEGTTEVFSTILSYPIVIKTYIERFRELEEKAIDYMNSQDIENEPVA RYIRFNEVMAGFSDEQVTEEKVAEDDHEEKIDTQRAYEFFTNLEKMFEEYQDKPNKKLYTKIVKEFDNLRLSTSHLQKLV DYIRLPYARVKEFERKILRLCVERSKTPRQEFIKVYKVGSLEWLEPLTKKYKFTENTIREIKNLTKQINQFQILMMMDIE ELKQVNLEISRSEAKITQAKKEMIEANLRLVVSEAKKYTNRGLHFLDIIQEGNIGLMKAVDKFDYRKGFKFSTYATWWIR QAITRSIADQARTIRVPVHMIETINKVNRIKRQILQEKGREATEEEIIEHTPNMSKEKLKKILNISHTPISMESPIGDDE DSTVGDFIEDKNNYSPIEAANLENLREAIKELIETGLTEREAKVLMMRFGIGMNTDHTLEEVGKQFNVTRERIRQIEAKA LRKLKHPSRSAFLKTFL A0A0B3WH85 MAGNESIUM ION 2.4305e-05 2 MG ZINC ION 6.5409e-05 2 ZN GUANOSINE-5',3'-TETRAPHOSPHATE 0.0006031599999999999 2 G4P singleParticle particle 0.4 8.0 ETHANE FEI TITAN KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 2.7 GATAN K3 (6k x 4k) COUNTING 60.0 1 C1 4.43 FSC 0.143 CUT-OFF RELION 3.0 116936 MAXIMUM LIKELIHOOD RELION 3.0 MAXIMUM LIKELIHOOD REAL