<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2181" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2012-08-24</deposition>
         <header_release>2012-09-05</header_release>
         <map_release>2012-10-03</map_release>
         <update>2012-11-28</update>
      </key_dates>
      <title>Electron microscopy map of SOS1 antiporter</title>
      <authors_list>
         <author>Nunez Ramirez R</author>
         <author>Sanchez Barrena MJ</author>
         <author>Villalta I</author>
         <author>Vega JF</author>
         <author>Pardo JM</author>
         <author>Quintero FJ</author>
         <author>Martinez Salazar J</author>
         <author>Albert A</author>
      </authors_list>
      <keywords>membrane protein, plant salt tolerance, protein structure</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Nunez-Ramirez R</author>
               <author order="2">Sanchez-Barrena MJ</author>
               <author order="3">Villalta I</author>
               <author order="4">Vega JF</author>
               <author order="5">Pardo JM</author>
               <author order="6">Quintero FJ</author>
               <author order="7">Martinez-Salazar J</author>
               <author order="8">Albert A</author>
               <title>Structural insights on the plant salt-overly-sensitive 1 (SOS1) Na(+)/H(+) antiporter.</title>
               <journal>J.MOL.BIOL.</journal>
               <volume>424</volume>
               <first_page>283</first_page>
               <last_page>294</last_page>
               <year>2012</year>
               <external_references type="PUBMED">23022605</external_references>
               <external_references type="DOI">doi:10.1016/j.jmb.2012.09.015</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Antiporter SOS1</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Antiporter SOS1</name>
            <details>This sample is a membrane protein and is purified with lipids and detergents surrounding the membrane domain</details>
            <oligomeric_state>Dimer</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">0.36</experimental>
               <theoretical units="MDa">0.254</theoretical>
               <method>Gel filtration, Electron microscopy image analysis, Dynamic light scattering</method>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>Na+/H+ antiporter SOS1</name>
            <natural_source database="NCBI">
               <organism ncbi="3702">Arabidopsis thaliana</organism>
               <synonym_organism>Thale Cress</synonym_organism>
               <cellular_location>Plasma membrane</cellular_location>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.127</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>Dimer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="4932">Saccharomyces cerevisiae</recombinant_organism>
               <recombinant_plasmid>pYGE15</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>8.5</ph>
                  <details>50 mM phosphate buffer pH 8.5, 300 mM NaCl, 10% glycerol, 0.05%
DDM, 250 mM imidazole</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>Purified SOS1 was adsorbed to glow-discharged carbon coated grids and stained with 2% uranyl formate</details>
               </staining>
               <grid>
                  <details>400 mesh carbon coated copper grid, glow discharged in moderate vacuum</details>
               </grid>
               <vitrification>
                  <cryogen_name>NONE</cryogen_name>
                  <instrument>OTHER</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>JEOL 2100</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>LAB6</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">1.0</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.0</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">2.5</nominal_defocus_max>
               <nominal_magnification>20000.0</nominal_magnification>
               <calibrated_magnification>20000.0</calibrated_magnification>
               <specimen_holder_model>JEOL</specimen_holder_model>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Objective lens astigmatism was corrected at 120.000-150.000 times magnification and confirmed by inspection of the Fourier transform</astigmatism>
                  </legacy>
               </alignment_procedure>
               <date>2010-11-01</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GATAN ORIUS SC200 (2k x 2k)</film_or_detector_model>
                     <number_real_images>90</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">15</average_electron_dose_per_image>
                     <bits_per_pixel>14.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Single images of SOS1 were manually extracted using EMAN. 2D reference-free classification, 2D averaging, 3D classification and reconstruction were performed using maximum-likelihood methods implemented in XMIPP package.</details>
            <ctf_correction>
               <details>Each micrograph. Estimation using CTFFIND3 and correction using Bsoft</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C2</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">25.9</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>XMIPP</name>
                  </software>
               </software_list>
               <number_images_used>5600</number_images_used>
            </final_reconstruction>
            <final_two_d_classification>
               <number_classes>96</number_classes>
            </final_two_d_classification>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
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      <file>emd_2181.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>80</col>
         <row>80</row>
         <sec>80</sec>
      </dimensions>
      <origin>
         <col>1</col>
         <row>1</row>
         <sec>1</sec>
      </origin>
      <spacing>
         <x>80</x>
         <y>80</y>
         <z>80</z>
      </spacing>
      <cell>
         <a units="&#8491;">264.0</a>
         <b units="&#8491;">264.0</b>
         <c units="&#8491;">264.0</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.065363</minimum>
         <maximum>0.27206999</maximum>
         <average>0.00227356</average>
         <std>0.01978735</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">3.3</x>
         <y units="&#8491;">3.3</y>
         <z units="&#8491;">3.3</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.04</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of SOS1 antiporter</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2181::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_2181.tif</file>
         </figure>
      </figure_list>
   </interpretation>
</emd>