<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2179" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2012-08-20</deposition>
         <header_release>2012-08-29</header_release>
         <map_release>2013-02-27</map_release>
         <update>2013-02-27</update>
      </key_dates>
      <title>Electron cryo-microscopy of C. thermophilum RAC bound to the 80S ribosome</title>
      <authors_list>
         <author>Leidig C</author>
         <author>Bange G</author>
         <author>Kopp J</author>
         <author>Amlacher S</author>
         <author>Aravind A</author>
         <author>Wickles S</author>
         <author>Witte G</author>
         <author>Hurt E</author>
         <author>Beckmann R</author>
         <author>Sinning I</author>
      </authors_list>
      <keywords>ribosome-associated complex, RAC, ribosome, 80S, chaperone, co-translational folding</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Leidig C</author>
               <author order="2">Bange G</author>
               <author order="3">Kopp J</author>
               <author order="4">Amlacher S</author>
               <author order="5">Aravind A</author>
               <author order="6">Wickles S</author>
               <author order="7">Witte G</author>
               <author order="8">Hurt E</author>
               <author order="9">Beckmann R</author>
               <author order="10">Sinning I</author>
               <title>Structural characterization of a eukaryotic chaperone--the ribosome-associated complex.</title>
               <journal>NAT.STRUCT.MOL.BIOL.</journal>
               <volume>20</volume>
               <first_page>23</first_page>
               <last_page>28</last_page>
               <year>2013</year>
               <external_references type="PUBMED">23202586</external_references>
               <external_references type="DOI">doi:10.1038/nsmb.2447</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Ribosome-associated complex (RAC) bound to 80S ribosome</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Ribosome-associated complex (RAC) bound to 80S ribosome</name>
            <details>Sample was reconstituted from the purified components</details>
            <oligomeric_state>One RAC binds to one ribosome</oligomeric_state>
            <number_unique_components>2</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">3.2</theoretical>
            </molecular_weight>
         </sample_supramolecule>
         <complex_supramolecule supramolecule_id="1">
            <name>80S ribosome</name>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <natural_source database="NCBI">
               <organism ncbi="209285">Chaetomium thermophilum</organism>
               <cellular_location>cytosol</cellular_location>
            </natural_source>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <molecular_weight>
               <theoretical units="MDa">3.1</theoretical>
            </molecular_weight>
            <ribosome-details>ribosome-eukaryote: ALL</ribosome-details>
         </complex_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="RAC">Ribosome-associated complex</name>
            <natural_source database="NCBI">
               <organism ncbi="209285">Chaetomium thermophilum</organism>
               <cellular_location>cytosol</cellular_location>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.11</theoretical>
            </molecular_weight>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>7.0</ph>
                  <details>20 mM Tris-HCl, 100 mM KOAc, 100 mM sucrose, 7.5 mM Mg(OAc)2, 2 mM DTT</details>
               </buffer>
               <grid>
                  <details>carbon supported</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">95</chamber_humidity>
                  <instrument>FEI VITROBOT MARK III</instrument>
                  <method>Blot for 3.5 s before plunging</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2.7</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.2</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.7</nominal_defocus_max>
               <nominal_magnification>75000.0</nominal_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <details>Final magnification of the object on the CCD image is 148721</details>
               <date>2011-07-06</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">TVIPS TEMCAM-F416 (4k x 4k)</film_or_detector_model>
                     <number_real_images>6954</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">20</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Particles selected by signature. Refinement with spider.</details>
            <ctf_correction>
               <details>Particle groups with similar defocus</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">9.6</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>SPIDER</name>
                  </software>
               </software_list>
               <details>Sorting for ribosome conformation and ligand presence was performed</details>
               <number_images_used>26038</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="41031">
      <file>emd_2179.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>219</col>
         <row>219</row>
         <sec>219</sec>
      </dimensions>
      <origin>
         <col>-109</col>
         <row>-109</row>
         <sec>-109</sec>
      </origin>
      <spacing>
         <x>219</x>
         <y>219</y>
         <z>219</z>
      </spacing>
      <cell>
         <a units="&#8491;">459.9</a>
         <b units="&#8491;">459.9</b>
         <c units="&#8491;">459.9</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-1450.795410160000074</minimum>
         <maximum>3006.467529300000024</maximum>
         <average>16.64499855</average>
         <std>275.968292239999982</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.10</x>
         <y units="&#8491;">2.10</y>
         <z units="&#8491;">2.10</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>160.0</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of the reconstituted complex of C. thermophilum RAC and C. thermophilum 80S ribosomes (Low-pass filtered between 18-20 A)</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2179::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_2179.png</file>
         </figure>
      </figure_list>
   </interpretation>
</emd>