2025-06-04 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY STRUCTURE_SUMMARY chem_comp chem_comp_atom chem_comp_bond database_2 em_admin pdbx_entry_details pdbx_modification_feature _chem_comp.mon_nstd_flag _chem_comp.type _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update _pdbx_entry_details.has_protein_modification EXPERIMENTAL_SUMMARY database_2 em_admin _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update DATA_COLLECTION em_admin em_software _em_admin.last_update _em_software.name EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name RCSB RCSB 2020-04-16 2021-02-03 2021-02-03 2025-06-04 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM127018 United States Kasinath V Nogales E chromatin, nucleosome, transcription, cryo-EM, ubiquitination, gene regulation-DNA complex, heterochromatin, DNA binding Kasinath V Beck C Sauer P Poepsel S Kosmatka J Faini M Toso D Aebersold R Nogales E Science US 371 2021 33479123 doi:10.1126/science.abc3393 1095-9203 0038 SCIEAS 6wkr FULLOVERLAP PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome 0 1 2 3 4 5 6 7 8 9 10 11 12 0.5 PRC2-AEBP2-JARID2 1 1 2 3 4 5 6 7 Homo sapiens H2AK119ub1 nucleosome 1 8 9 10 11 12 Xenopus laevis Ubiquitin Homo sapiens 0.008622922 2 Escherichia coli LEVO MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGC P0CG48 Polycomb protein SUZ12 Homo sapiens 0.083181922 1 Trichoplusia ni LEVO MAPQKHGGGGGGGSGPSAGSGGGGFGGSAAVAAATASGGKSGGGSCGGGGSYSASSSSSAAAAAGAAVLPVKKPKMEHVQ ADHELFLQAFEKPTQIYRFLRTRNLIAPIFLHRTLTYMSHRNSRTNIKRKTFKVDDMLSKVEKMKGEQESHSLSAHLQLT FTGFFHKNDKPSPNSENEQNSVTLEVLLVKVCHKKRKDVSCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPS NSHMVKSYSLLFRVTRPGRREFNGMINGETNENIDVNEELPARRKRNREDGEKTFVAQMTVFDKNRRLQLLDGEYEVAMQ EMEECPISKKRATWETILDGKRLPPFETFSQGPTLQFTLRWTGETNDKSTAPIAKPLATRNSESLHQENKPGSVKPTQTI AVKESLTTDLQTRKEKDTPNENRQKLRIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVY HPKGARIDVSINECYDGSYAGNPQDIHRQPGFAFSRNGPVKRTPITHILVCRPKRTKASMSEFLESEDGEVEQQRTYSSG HNRLYFHSDTCLPLRPQEMEVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFV ENYGQKIIKKNLCRNFMLHLVSMHDFNLISIMSIDKAVTKLREMQQKLEKGESASPANEEITEEQNGTANGFSEINSKEK ALETDSVSGVSKQSKKQKL Q15022 Polycomb protein EED Homo sapiens 0.050267690999999996 1 Trichoplusia ni LEVO MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTPNAPGRKSWGKGKWKSKKCKY SFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLIL SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR O75530 Histone-binding protein RBBP4 Homo sapiens 0.047709527 1 Trichoplusia ni LEVO MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLV IASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSK PDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI FQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ VWQMAENIYNDEDPEGSVDPEGQGS Q09028 Histone-lysine N-methyltransferase EZH2 Homo sapiens 0.08549229700000001 1 Trichoplusia ni LEVO MGQTGKKSEKGPVCWRKRVKSEYMRLRQLKRFRRADEVKSMFSSNRQKILERTEILNQEWKQRRIQPVHILTSVSSLRGT RECSVTSDLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIEELIKNYDGKVHGD RECGFINDEIFVELVNALGQYNDDDDDDDGDDPEEREEKQKDLEDHRDDKESRPPRKFPSDKIFEAISSMFPDKGTAEEL KEKYKELTEQQLPGALPPECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLHPFHATPNTYKRKNTETALDNKPC GPQCYQHLEGAKEFAAALTAERIKTPPKRPGGRRRGRLPNNSSRPSTPTINVLESKDTDSDREAGTETGGENNDKEEEEK KDETSSSSEANSRCQTPIKMKPNIEPPENVEWSGAEASMFRVLIGTYYDNFCAIARLIGTKTCRQVYEFRVKESSIIAPA PAEDVDTPPRKKKRKHRLWAAHCRKIQLKKDGSSNHVYNYQPCDHPRQPCDSSCPCVIAQNFCEKFCQCSSECQNRFPGC RCKAQCNTKQCPCYLAVRECDPDLCLTCGAADHWDSKNVSCKNCSIQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISE YCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVMMVNGDHRIGIFAKRAIQTGE ELFFDYRYSQADALKYVGIEREMEIP Q15910 2.1.1.356 Protein Jumonji Homo sapiens 0.049306074 2 Trichoplusia ni LEVO MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNSQKRQHAEGIAGSLKTVNGLLGNDQSKGLGPASEQSEN EKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQR(M3L)FAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTED FLTFLCLRGSPALPNSMVYFGSSQDEEEVEEEDDETEDVKTATNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSTREKE PVQKHKSKEATPAKEKHSDHRADSRREQASANHPAAAPSTGSSAKGLAATHHHPPLHRSAQDLRKQVSKVNGVTRMSSLG AGVTSAKKMREVRPSPSKTVKYTATVTKGAVTYTKAKRELVKDTKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGA SKSTGPAVNGLKVSGRLNPKSCTKEVGGRQLREGLQLREGLRNSKRRLEEAHQA Q92833 Zinc finger protein AEBP2 Homo sapiens 0.033012667999999995 1 Trichoplusia ni LEVO MSSDGEPLSRMDSEDSISSTIMDVDSTISSGRSTPAMMNGQGSTTSSSKNIAYNCCWDQCQACFNSSPDLADHIRSIHVD GQRGGVFVCLWKGCKVYNTPSTSQSWLQRHMLTHSGDKPFKCVVGGCNASFASQGGLARHVPTHFSQQNSSKVSSQPKAK EESPSKAGMNKRRKLKNKRRRSLPRPHDFFDAQTLDAIRHRAICFNLSAHIESLGKGHSVVFHSTVIAKRKEDSGKIKLL LHWMPEDILPDVWVNESERHQLKTKVVHLSKLPKDTALLLDPNIYRTMPQKRLKR Q6ZN18 DNA (314-MER) Homo sapiens 0.09818609399999999 1 (DC)(DA)(DG)(DG)(DA)(DT)(DG)(DT)(DA)(DT)(DA)(DT)(DA)(DT)(DC)(DT)(DG)(DA)(DG)(DA) (DC)(DG)(DT)(DG)(DC)(DC)(DT)(DG)(DG)(DA)(DG)(DA)(DC)(DT)(DA)(DG)(DG)(DG)(DA)(DG) (DT)(DA)(DA)(DT)(DC)(DC)(DC)(DC)(DT)(DT)(DG)(DG)(DC)(DG)(DG)(DT)(DT)(DT)(DA)(DA) (DA)(DC)(DG)(DC)(DG)(DG)(DG)(DG)(DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DG)(DT)(DA)(DC) (DG)(DT)(DG)(DC)(DG)(DT)(DT)(DT)(DT)(DA)(DG)(DC)(DG)(DG)(DT)(DG)(DC)(DT)(DA)(DG) (DA)(DG)(DC)(DT)(DG)(DT)(DC)(DT)(DA)(DC)(DG)(DA)(DC)(DC)(DA)(DA)(DT)(DT)(DG)(DA) (DG)(DC)(DG)(DG)(DC)(DC)(DT)(DG)(DG)(DG)(DC)(DA)(DC)(DC)(DG)(DG)(DG)(DA)(DT)(DT) (DC)(DT)(DC)(DC)(DA)(DG)(DC)(DC)(DG)(DC)(DC)(DG)(DG)(DC)(DA)(DG)(DC)(N)(N)(N)(N) (N)(N)(DG)(DC)(DT)(DG)(DC)(DC)(DG)(DG)(DC)(DG)(DG)(DC)(DT)(DG)(DG)(DA)(DG)(DA) (DA)(DT)(DC)(DC)(DC)(DG)(DG)(DT)(DG)(DC)(DC)(DG)(DA)(DG)(DG)(DC)(DC)(DG)(DC)(DT) (DC)(DA)(DA)(DT)(DT)(DG)(DG)(DT)(DC)(DG)(DT)(DA)(DG)(DA)(DC)(DA)(DG)(DC)(DT)(DC) (DT)(DA)(DG)(DC)(DA)(DC)(DC)(DG)(DC)(DT)(DT)(DA)(DA)(DA)(DC)(DG)(DC)(DA)(DC)(DG) (DT)(DA)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DT)(DC)(DC)(DC)(DC)(DC)(DG)(DC)(DG)(DT)(DT) (DT)(DA)(DA)(DA)(DC)(DC)(DG)(DC)(DC)(DA)(DA)(DG)(DG)(DG)(DG)(DA)(DT)(DT)(DA)(DC) (DT)(DC)(DC)(DC)(DT)(DA)(DG)(DT)(DC)(DT)(DC)(DC)(DA)(DG)(DG)(DC)(DA)(DC)(DG)(DT) (DC)(DT)(DC)(DA)(DG)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DC)(DA)(DT)(DC)(DC)(DT)(DG) DNA Histone H3.2 Xenopus laevis 0.015421101 2 Escherichia coli LEVO MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA P84233 Histone H4 Xenopus laevis 0.011394426 2 Escherichia coli LEVO MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRK TVTAMDVVYALKRQGRTLYGFGG P62799 Histone H2A type 1 Xenopus laevis 0.014067397999999998 2 Escherichia coli LEVO MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII PRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKCTESAKSAKSK P06897 Histone H2B 1.1 Xenopus laevis 0.013979290999999998 2 Escherichia coli LEVO MPEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASR LAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK P02281 MAGNESIUM ION 2.4305e-05 1 MG S-ADENOSYL-L-HOMOCYSTEINE 0.000384411 1 SAH ZINC ION 6.5409e-05 1 ZN singleParticle particle 7.9 Quantifoil R2/2 GOLD 300 CARBON HOLEY ETHANE 100 278 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K3 BIOQUANTUM (6k x 4k) 50.0 1 Gctf PHASE FLIPPING AND AMPLITUDE CORRECTION C1 3.5 FSC 0.143 CUT-OFF 168601 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_21707_msk_1.map emd_21707_msk_2.map emd_21707_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.02049269 0.052688446 -0.00006986464 0.001578112 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: body 2 half map 1 multibody emd_21707_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.021299647 0.051348913 -0.000066113156 0.0017080763 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: body 1 half map 1 multibody emd_21707_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.013899969 0.059994265 -0.00006932768 0.0023146465 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: local res filtered map 2:1 (Bfac = 50) emd_21707_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.05294843 0.12655735 -0.00016813762 0.0022608472 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: body 2 local res filtered (Bfac = 50) emd_21707_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.054966737 0.13038006 -0.00015976552 0.0022529734 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: body 1 local res filtered (Bfac = 50) emd_21707_additional_12.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.03403123 0.09353095 -0.00005543292 0.0025384394 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: data set 2 loc res filtered (bfac 50) emd_21707_additional_11.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.026947597 0.059704497 -0.000008660945 0.0024071306 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: data set 2 half 2 emd_21707_additional_10.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.022529095 0.051430985 -0.0000075758035 0.0023519206 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: data set 2 half 1 emd_21707_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.02000372 0.054162584 -0.00007017494 0.0015709653 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: body 2 half map 2 multibody emd_21707_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.021170197 0.0517142 -0.00006549575 0.0016986654 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: body 1 half map 2 multibody emd_21707_additional_9.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.01328296 0.03783105 -0.000015115005 0.0015844882 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: half map-2 for 2:1 emd_21707_additional_8.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.013451543 0.034696624 -0.000016315536 0.001597607 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: half map-1 for 2:1 emd_21707_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.014774879 0.04090331 -0.00004658345 0.0015456141 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: half map 1 full refined map emd_21707_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 441.2928 441.2928 441.2928 90.0 90.0 90.0 X Y Z -0.013183321 0.039698217 -0.000047117417 0.0015409251 1.1492 1.1492 1.1492 AUTHOR ::::EMDATABANK.org::::EMD-21707:::: data set 2 half 1