REL PDBe PDBe PDBe 2012-08-09 2012-10-03 2013-02-13 2013-02-13 Thermococcus kodakaraensis 70S ribosome Armache J-P Anger AM Marquez V Frankenberg S Froehlich T Villa E Berninghausen O Thomm M Arnold GJ Beckmann R Wilson DN archaea, ribosome 70S protein, RNA, kink-turn, protein synthesis, mass spectrometry Armache J-P Anger AM Marquez V Frankenberg S Froehlich T Villa E Berninghausen O Thomm M Arnold GJ Beckmann R Wilson DN Promiscuous behaviour of archaeal ribosomal proteins: implications for eukaryotic ribosome evolution. NUCLEIC ACIDS RES. 41 1284 1293 2013 23222135 doi:10.1093/nar/gks1259 Thermococcus kodakaraensis 70S ribosome Thermococcus kodakaraensis 70S ribosome One ribosome 1 2.1 2.1 70S ribosome false Thermococcus kodakarensis 2.1 2.1 ribosome-prokaryote: LSU 50S, LSU RNA 23S, LSU RNA 5S, SSU 30S, PSR16s, ALL singleParticle particle 7.5 NEGATIVE
20 mM Hepes pH 7.5, 10 mM Mg(OAc)2, 30 mM NH4OAc, 4 mM beta-Mercaptoethanol
 ETHANE 100 FEI VITROBOT MARK I
Vitrification instrument: Vitrobot
Blot for 10 seconds before plunging, use 2 layers of filter paper FEI TECNAI 12 FLOOD BEAM BRIGHT FIELD LAB6 120 2.0 90000.0 90000.0 GATAN LIQUID NITROGEN 2008-08-09 FEI EAGLE (4k x 4k) OTHER 99 20
Eagle 4k CCD
Wiener filter on 3D volumes
 C1 OTHER 19.0 FSC 0.5 CUT-OFF SPIDER 10431 emd_2170.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 225 229 263 -101 -126 -165 225 229 263 757.99 744.75 870.52997 90.0 90.0 90.0 Y X Z 0.0 0.002648 0.0001853 0.00041397 3.31 3.31 3.31 0.001 EMDB Thermococcus kodakaraensis 70S ribosome
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 3CC2 RIGID BODY FIT UCSF Chimera
Protocol: Rigid-body fit into the density using UCSF Chimera built-in "Fit in Map". Rigid-body fit into the density using UCSF Chimera built-in "Fit in Map"
REAL